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Report for CCDS41670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41670.1 Public Homo sapiens 11 SLC25A45 24 110 108 CCDS HistoryNCBI Gene:283130Re-query CCDS DB by CCDS ID:41670.1Re-query CCDS DB by GeneID:283130See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41670.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398802.6 ENSP00000381782.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398802.6Link to Ensembl Protein Viewer:ENSP00000381782.1Re-query CCDS DB by Nucleotide ID:ENST00000398802Re-query CCDS DB by Protein ID:ENSP00000381782
Original member Current member EBI ENST00000527174.5 ENSP00000435489.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527174.5Link to Ensembl Protein Viewer:ENSP00000435489.1Re-query CCDS DB by Nucleotide ID:ENST00000527174Re-query CCDS DB by Protein ID:ENSP00000435489
Original member Current member NCBI NM_001352381.2 NP_001339310.2 Accepted alive Link to Nucleotide Sequence:NM_001352381.2Link to Protein Sequence:NP_001339310.2Re-query CCDS DB by Nucleotide ID:NM_001352381Re-query CCDS DB by Protein ID:NP_001339310Link to BLAST:NP_001339310.2
Original member Current member NCBI NM_182556.4 NP_872362.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182556.4Link to Protein Sequence:NP_872362.4Re-query CCDS DB by Nucleotide ID:NM_182556Re-query CCDS DB by Protein ID:NP_872362Link to BLAST:NP_872362.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001339310.2 288 Q8N413-1 288 100% 0 0
NP_872362.4 288 Q8N413-1 288 100% 0 0

Chromosomal Locations for CCDS 41670.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65376407 65376675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65376818 65377076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65379376 65379561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65379867 65379938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65380132 65380175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65381915 65381951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGCCGGTGGAGGAATTTGTGGCTGGCTGGATCTCTGGCGCTCTGGGCTTGGTCCTGGGACACCCGTTTG
ACACTGTAAAGGTGAGGCTGCAGACCCAGACCACCTACCGGGGCATCGTTGATTGCATGGTCAAGATTTA
CCGCCATGAGTCCCTCCTGGGCTTCTTCAAGGGAATGAGCTTCCCCATTGCCAGCATAGCTGTGGTCAAC
TCTGTCCTGTTTGGGGTCTATAGCAACACCCTGCTGGTGCTCACGGCCACCTCCCACCAGGAGCGGCGGG
CCCAGCCGCCCAGCTACATGCACATCTTCCTAGCGGGCTGCACCGGGGGGTTCCTGCAGGCCTACTGTCT
GGCTCCTTTTGACCTCATCAAAGTCCGGCTACAAAACCAGACAGAGCCAAGGGCCCAGCCAGGGAGCCCC
CCACCCCGGTACCAGGGGCCCGTGCACTGTGCAGCCTCCATCTTCCGGGAGGAGGGGCCCCGGGGGCTGT
TCCGAGGAGCCTGGGCCCTGACGCTGAGGGACACCCCCACGGTGGGGATCTACTTCATCACCTATGAAGG
GCTCTGTCGCCAGTACACACCAGAAGGCCAGAATCCCAGCTCAGCCACGGTGCTGGTGGCAGGGGGCTTT
GCAGGCATTGCTTCCTGGGTGGCAGCCACGCCCTTAGACATGATCAAGTCCCGGATGCAGATGGATGGAC
TGAGACGCAGAGTGTACCAGGGGATGCTGGACTGCATGGTGAGCAGCATCCGGCAGGAAGGACTGGGAGT
CTTCTTCCGGGGGGTCACCATCAACAGTGCCCGCGCCTTTCCCGTCAATGCTGTCACCTTCCTCAGCTAC
GAATATCTCCTCCGCTGGTGGGGATGA

Translation (288 aa):
MPVEEFVAGWISGALGLVLGHPFDTVKVRLQTQTTYRGIVDCMVKIYRHESLLGFFKGMSFPIASIAVVN
SVLFGVYSNTLLVLTATSHQERRAQPPSYMHIFLAGCTGGFLQAYCLAPFDLIKVRLQNQTEPRAQPGSP
PPRYQGPVHCAASIFREEGPRGLFRGAWALTLRDTPTVGIYFITYEGLCRQYTPEGQNPSSATVLVAGGF
AGIASWVAATPLDMIKSRMQMDGLRRRVYQGMLDCMVSSIRQEGLGVFFRGVTINSARAFPVNAVTFLSY
EYLLRWWG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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