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Report for CCDS41652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41652.1 Public Homo sapiens 11 MS4A14 24 110 108 CCDS HistoryNCBI Gene:84689Re-query CCDS DB by CCDS ID:41652.1Re-query CCDS DB by GeneID:84689See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 41652.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395005.6 ENSP00000378453.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395005.6Link to Ensembl Protein Viewer:ENSP00000378453.2Re-query CCDS DB by Nucleotide ID:ENST00000395005Re-query CCDS DB by Protein ID:ENSP00000378453
Original member Current member NCBI NM_001079692.3 NP_001073160.1 Accepted alive Link to Nucleotide Sequence:NM_001079692.3Link to Protein Sequence:NP_001073160.1Re-query CCDS DB by Nucleotide ID:NM_001079692Re-query CCDS DB by Protein ID:NP_001073160Link to BLAST:NP_001073160.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073160.1 662 Q96JA4-2 662 100% 0 0

Chromosomal Locations for CCDS 41652.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60396579 60396716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60397852 60397980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60402912 60403061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60415437 60417008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGGAGTCAACATCCCAGGACAGAAGGGCAACTCACGTCATCACTATAAAACCAAACGAAACTGTATTGA
CTGCATTTCCCTACAGACCTCATAGCTCTCTGCTGGATTTTCTGAAGGGAGAGCCAAGAGTCTTGGGGGC
TACCCAGATCCTGCTTGCTCTAATCATTGTGGGCTTTGGAACTATATTTGCACTTAATTACATCGGTTTC
TCCCAAAGACTTCCCCTTGTTGTCCTCACAGGATATCCATTCTGGGGAGCACTTATTGGTCAAGGTGTCA
CGGGCATGAATGTTATCAGCTCCTTGGTTGCGATAACTGGGATTACTTTCACCATTCTCAGCTACAGACA
TCAAGACAAGTACTGCCAGATGCCATCCTTTGAAGAAATATGTGTTTTCAGTAGAACTCTTTTCATTGTT
CTGTTTTTCTTGCCTTCGGATGTTACTCAAAATAGTGAACAACCTGCCCCAGAAGAAAATGATCAATTAC
AATTTGTGCTTCAAGAAGAGTTTTCCAGTGATGATTCAACAACAAATGCACAATCTGTTATCTTTGGAGG
CTATGCTTTCTTCAAGTTAACACTCTCTAGGAGTCCTTTAGTCTCCCAACCAGGTAATAAAGGTAGAGAA
TTTGTGCCAGATGAACAAAAGCAAAGTATCCTTCCATCTCCCAAATTTTCAGAGGAAGAAATTGAACCTT
TGCCTCCCACACTAGAGAAAAAGCCCTCAGAAAATATGTCCATTCAGCTAGACTCTACATTTAAACAAAT
GAAAGATGAAGATCTACAATCTGCTATTGTACAACCTTCTCAAATGCAAACCAAGCTTCTGCAGGACCAA
GCTGCGTCACTCCAAGTTTTTCCATCCCATTCTGCACTAAAACTCGAAGATATATCACCTGAAGACTTGC
CATCCCAAGCTCTACCAGTAGAAGGCCTGTCAGAACAAACCATGCCATCTAAGTCTACATCATCCCATGT
CAAACAGTCTTCTAATCTGACAGCTAATGACCTGCCCCCTCAAGGCATACTATCCCAAGACACATCATCT
CAAGATATGCTGTTTCATGACATGACATCCCAAGATATGCAATCCCTAGATATGCTATCTCAAGACACAC
CATCCCACGCCATGCCACCTCAAGACATACCTTCCCAAGATATGCTATCCCAAGCTCTATCAGCGCATGC
CATATTACCTGAAGCCTCAACATCCCATATTGTGCAGTTCCCTGAAATACAACACCTACTTCAGCAGCCC
CCAGATCTTCAACCAGAAAACACTGAACCTCAAAACCAGCAAATTTTACAAATGTCATATCAAGATATTA
GATCAGAAGTTATGGAAGAGACCAAAGAATGGAAATCTGAGGAGGAACTCCATAGAAGAAAATCCTCAAG
ACGGCATTCCTTAAACCAGCAAACCAAAGCCTTGCAATACTTAAGGAGACATTCTTTAGACGTGCAAGCC
AAAGGCCAGAAATCCTCAAAGAGGCATTCCTTAGATCAGCAAAGCAAAGGCTGGCAATCTCCAAAGCAGA
AATCCTTAGACCAGCAAATCAAAGACTGGCTATCCCCAAAGAGGCACTCCGTAGATAAGCAAGCTCAACT
TAATCAAACTAAAGAGCAACTCCCAGATCAGCAAGCTGAAGATCAGCAAGCCAAAGGGGAACAATACCCA
GAAGGACAATCTAAAGATGGACAAGTTAAAGACCAGCAGACTGATAAGGAGCAAAACTCAAAGAAGCAAA
CCCAGGATCAGCAAACTGAAGACCAGCCGGCCCAAGAGAAGAAATCCCCGAAAGGACAATTCCAAAATGT
TCAAGCCGAAGGACAGCAAGCTCAGGTGGAGAAAGTGCCAAAACTGTTATGCCAAGATTCAGAATCCCAA
ATACAGCAATACCAATTCTGGCAATTCCACAAAGGCAATCTCCAGGCTGGACAACCCAGGACTGTCAATC
TTTTGGCCAAGAATCCCCTGACTGGATAA

Translation (662 aa):
MESTSQDRRATHVITIKPNETVLTAFPYRPHSSLLDFLKGEPRVLGATQILLALIIVGFGTIFALNYIGF
SQRLPLVVLTGYPFWGALIGQGVTGMNVISSLVAITGITFTILSYRHQDKYCQMPSFEEICVFSRTLFIV
LFFLPSDVTQNSEQPAPEENDQLQFVLQEEFSSDDSTTNAQSVIFGGYAFFKLTLSRSPLVSQPGNKGRE
FVPDEQKQSILPSPKFSEEEIEPLPPTLEKKPSENMSIQLDSTFKQMKDEDLQSAIVQPSQMQTKLLQDQ
AASLQVFPSHSALKLEDISPEDLPSQALPVEGLSEQTMPSKSTSSHVKQSSNLTANDLPPQGILSQDTSS
QDMLFHDMTSQDMQSLDMLSQDTPSHAMPPQDIPSQDMLSQALSAHAILPEASTSHIVQFPEIQHLLQQP
PDLQPENTEPQNQQILQMSYQDIRSEVMEETKEWKSEEELHRRKSSRRHSLNQQTKALQYLRRHSLDVQA
KGQKSSKRHSLDQQSKGWQSPKQKSLDQQIKDWLSPKRHSVDKQAQLNQTKEQLPDQQAEDQQAKGEQYP
EGQSKDGQVKDQQTDKEQNSKKQTQDQQTEDQPAQEKKSPKGQFQNVQAEGQQAQVEKVPKLLCQDSESQ
IQQYQFWQFHKGNLQAGQPRTVNLLAKNPLTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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