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Report for CCDS41625.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41625.2 Public Homo sapiens 11 IGSF22 24 110 108 CCDS HistoryNCBI Gene:283284Re-query CCDS DB by CCDS ID:41625.2Re-query CCDS DB by GeneID:283284See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 41625.1
The coding region has been updated to represent an alternative transcript variant that is more likely to be protein-coding. The previous representation was a candidate for nonsense-mediated mRNA decay (NMD). The update adds two FN3 and two IGcam domains to the C-terminus, which is better supported by paralogous proteins.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41625.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513874.6 ENSP00000421191.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000513874.6Link to Ensembl Protein Viewer:ENSP00000421191.1Re-query CCDS DB by Nucleotide ID:ENST00000513874Re-query CCDS DB by Protein ID:ENSP00000421191
Original member Current member NCBI NM_173588.4 NP_775859.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173588.4Link to Protein Sequence:NP_775859.4Re-query CCDS DB by Nucleotide ID:NM_173588Re-query CCDS DB by Protein ID:NP_775859Link to BLAST:NP_775859.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775859.4 1326 Q8N9C0-2 1326 100% 0 0

Chromosomal Locations for CCDS 41625.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 18704468 18704538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18705817 18706146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18706914 18707213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18707804 18707996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18708207 18708295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18709387 18709683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18710327 18710455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18710655 18710828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18712082 18712384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18713852 18714148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18714277 18714418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18714500 18714624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18715432 18715716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18716728 18717000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18717931 18718093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18718615 18718728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18719716 18719893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18720064 18720103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18720186 18720285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18721535 18721671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18721910 18722041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18724128 18724236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3981 nt):
ATGACAACCATTCACAGCCGGCAGATGCTGCAGGAGCACGTGTCCATGGAGTTCTCCAGCTCCACCACCC
ACGTGCAGACCTTCTCCCAGACAACCAAGATCGTGGGAGAGGAGGTCGTGAGGAGGAAGTCCTCGAGCAT
AGTGGAGTTCTTCAGCTTAGTGACCCGGAGCTCAAACATCCCTGCGGGCGACAGCGTCCCTGAGTTCGTG
GAGAAGCCTCAACCGGTCACCGCGCCCGAGGGGGACAAAGCCGTGTTCCGAGCCCGGGTGCAGGGGAACG
CCAAACCCCACATCTCCTGGAAGAGGGAGAGCGGCATCCCCATCAAGGAGTCCGCCAAGATATTCTACGA
CAGCATTAACAAGGAACACGTGCTGAAGCTGGAGCCACTGACTTCGGATGACTCTGACAACTATAAGTGC
ATTGCAAGCAATGACCATGCAGATGCCATCTATACCGTATCTCTGCTGGTAACAGAAGGTCAAGAGAAAA
TGGACTTCAAAAAGATGCTGAAGAAGAGGGCACCCCCTGCTCCCAAGAAGAAGCAGAAGAAGGTGGCAAA
TGAGAAAGAGATGCTGGAGATTTTGTCCAAAGTGCCCAAGAAAGACTTTGAGAAGGTGTGCATGGAGTAT
GGTTTCACCGACTTTCGGGGGCTGCTCAGGAAGCTCAAAGAGATGAAGAAGAAAGTAGAGGTGGAGGCCA
TCCGGATTCTGAAGCCCCTGGAAGACAAAGAGACCAAGGTTGACACCACAGTGGTCTTTGACTGCATAAT
GGAACTGAAAGACCCCAATGTCAAGATGATATGGATCAAGGGTACTGAGCCACTGAGGATCCAGTACTCC
CTGGGCAAGTACGATGTGAAGCAGATGGGCACCAAGTACATGCTGGTTATTAGCAACGTGAACATGAACG
ATGCTGGCATCTACAGCCTGTCCGTGGGCGATAAGCGGATGAGTGCAGAGCTCACAGTGCTGGATGAGCC
ACTGAAGTTCCTGGGAGAGATGAAGCCTGTGAAGGTGACAGAGCGCCAGACAGCTGTGTTTGAGATCCGC
CTCTCCAAGAAAGAGCCCAACTTTGTGTGGAAGTTCAATGGGAAGGAGCTGAAGAGGGATGACAAGTATG
AAATCACGGTGTCCGAAGATGGTCTGACGCACACGCTTAAGATTAAGGATGCCAGACTCAGTGACAGCGG
CGAGTTCTCTGCTGAGGCGGGGAACCTGGTACAAAAGGCCCAGCTCACTGTTGACCGCATCCCCATCAAG
TTTGTGAGCAACCTCAAAAATGTACGTGTGAAAGAGAGGAGTCGCGCATGCCTGGAGTGTGAGCTGACAT
CCAAGGATGTGACACTGCGCTGGAAGAAGGATGGGCAGCTGCTGATGCATGGCACTAAGTACAGCATGAA
CCATGAGGGCAAGCGAGCAGAGCTGATCATTGAGGATGCACAGCTCAGTGATGGTGGCGAGTACACTGTG
GTGGCCATGCAGGATGGAGACCCTACTGAATACTACAGTACTGCCATCGTCACTGTGGAGGAGCGTCTGG
CCACAGTGAAGAGCGGGATGTCCGACGTGCACGCGGCCACTGGGAGCCCAGCTGAGTTGTGTGTAGTGCT
GAATGACGAGAAGGTGGAGGGTGTGTGGCTGAAGGATGGCAAGGAGATCACGGACTTGCCAGGCATGCAG
ATTGTGAAGCAGGGTGCAGTGCACAAGCTCATCTTTCCCAGTATGGGCCCTGAGCACGAGGGCAAGTACA
CATTCCGGGCCAAGGGCACGGAAAGTGAAGCCTCTGTATTCATCGCAGATCCTCCTACCATCGACCCGTC
AGTACTGGAGGCACTGGCTGCGCACGCCATCACTGTGAAGGTAGGCCACACGGCCCACATCAAGGTCCCC
TTCCGGGGAAAACCACTGCCCAAAGTGACATGGTACAAGGATGGCATGGAAGTGACGGAGGAGGAACGCG
TGTCCATGGAGCGCGGGGAAGACCAGGCACTGCTCACCATCTCCAACTGTGTGCGTGAAGACAGCGGCCT
CATCCTGCTCAAGCTCAAGAATGACCACGGCTCAGCCACGGCCACTCTGCACCTTAGTGTGCTGGACCGT
CCAAAGCCTCCACAGGGCCGGGTGGAGTTCCTGGAGCTCTCAGGTAGTTGTGTGCACATGAAGTGGAAGG
CCCCAAAGGACAATGGTGGACGACCTGTGACACAGTTCATAGTGGAACGGAGGGCAGTTGGCAAGAAGTC
CTGGATTAAGATAGGCGAGGTGGACGGCAAAGTCACCAACTTCTCCACCAACAAGGTGGAAGAGGGAAAA
GCCTACCAGTTCCGTATCCTGGCAGTCAATTCAGAAGGTGTGAGTGACCCACTGGAGACAGAAGAAGTGT
TTGCAGGAAATCCCATAGAGCCTCCTGGTTTTGCCTCCCAGCCTCAAGTGACTGATGTGACTAAAGAAGC
CGTGACCATCACGTGGAATGCCCCTACCCAGGATGGGGGAGCCCCAGTGCTCGGCTACATTGTAGAACGA
AGGAAGAAAGGCAGCAACCTGTGGGTGCCAGTCAACAAGGACCCCATCCAGGGCACCAAGTGCACTGTGG
ATGGTCTCCTGGAGGACACAGAATATGAATTCCGAGTTATAGCTGTAAATAAGGCAGGCCCTGGACAGCC
CAGTGTGCCATCCAGCTCAGTAGTGGCCAAGGATCCTGTTAAACCCCCAGGCCTGGTCCAGGACCTGCAT
GTATCTGATTCCTCCAACTCCAGCATTTCCCTGGCCTGGCGGGAGCCTGCAGAGGGAGACCCACCCTCTG
GCTACATCCTTGAGATGAGGGCTGAAGACACAAAGGAGTGGTCCAAGTGCACAAAGATCCCCATCTCAGG
CACCTGCTACACAGTGGGAGGACTCATCGAGAGGCAGAAATACTTCTTCCGAATCCGGGCTGTGAATGAG
GCTGGGGTTGGGGAGCCTGTGGAGCTAGACAAGGGGGTCCGTGCCATGCCACCACCAGCTGCACCCAAGT
TTGACCTCAGTGCCCGGCTGAAGAGTCACATGGTGGTTCGCGCTGGGACAGCCCTCTGCATCCATGCAGC
CTTCTCTGGCTCACCACCACCTGACGTGATCTGGCAGAAAGATGGCGTTCCCACCAAGGGCCGAGAGACA
ATTACCAAGAGCAAAAACCACTCCCAGTTCCTCATTAATAGCACCAAGCGCTCTGACTCAGGGGTGTACC
GAATCTTGCTTCAGAATGAGTTTGGAGAAGCACGCTATGACATCCATGTGCGCGTGGCAGATTTCCCTCG
GCCCCCCACAAACCTACGGTTGTTTGAGGAAGTCCCCAACACAGTGACTCTGACCTGGAACCACAGCCCA
GATGTGCAGGAGGACGGTGAGGCTCACTACATCATCATGAAGCGGGATGCAAGCACAGCCACCTGGTACA
CGGCAGCCGAGCGTGTCTTCAGCAACAAGTACACAGTGACGGGGCTGCTCCCAGGCAGGAAGTACTACTT
CAGAGTGGTGGCTCGGAATGAAATCGGTGACAGTGAGCCACTTGACTCCAGGGACACCTGGCTCATCAAT
AAGGACCAGATCCAGGACCTGAGCGCCAAGCTCAAGCCCTACGAGAAGAAGGACTGGCGCCACGCGCCGC
GCTTCGTGACGCCCCTCAAGCCACACACGGTGCTCCGCGGCCAGGACTGCACCATGACCTGCGCCTTCCT
TGGGAACCCGCGGCCCACAGTGACCCTCTACAAGGGCGACGTCAACATCACGGCCAACTCCAAGTTCTGG
TACAACTCCACCAGCGGCGTGTGCACCCTCGTCATCCCCACCTGCACGCTCAAGGACAGCGGCGATTACA
GCGTGCTGGTGGAGAACGAGCTGGGCAAGGACCGCAGCAGCTGCACGCTCACCGTCTATGACAAAGATGA
TAAGTCAGTTGTAGCATCCATCACCGAGAGTCTGCAGAAGAAATCAAAGCACCTCATGTGA

Translation (1326 aa):
MTTIHSRQMLQEHVSMEFSSSTTHVQTFSQTTKIVGEEVVRRKSSSIVEFFSLVTRSSNIPAGDSVPEFV
EKPQPVTAPEGDKAVFRARVQGNAKPHISWKRESGIPIKESAKIFYDSINKEHVLKLEPLTSDDSDNYKC
IASNDHADAIYTVSLLVTEGQEKMDFKKMLKKRAPPAPKKKQKKVANEKEMLEILSKVPKKDFEKVCMEY
GFTDFRGLLRKLKEMKKKVEVEAIRILKPLEDKETKVDTTVVFDCIMELKDPNVKMIWIKGTEPLRIQYS
LGKYDVKQMGTKYMLVISNVNMNDAGIYSLSVGDKRMSAELTVLDEPLKFLGEMKPVKVTERQTAVFEIR
LSKKEPNFVWKFNGKELKRDDKYEITVSEDGLTHTLKIKDARLSDSGEFSAEAGNLVQKAQLTVDRIPIK
FVSNLKNVRVKERSRACLECELTSKDVTLRWKKDGQLLMHGTKYSMNHEGKRAELIIEDAQLSDGGEYTV
VAMQDGDPTEYYSTAIVTVEERLATVKSGMSDVHAATGSPAELCVVLNDEKVEGVWLKDGKEITDLPGMQ
IVKQGAVHKLIFPSMGPEHEGKYTFRAKGTESEASVFIADPPTIDPSVLEALAAHAITVKVGHTAHIKVP
FRGKPLPKVTWYKDGMEVTEEERVSMERGEDQALLTISNCVREDSGLILLKLKNDHGSATATLHLSVLDR
PKPPQGRVEFLELSGSCVHMKWKAPKDNGGRPVTQFIVERRAVGKKSWIKIGEVDGKVTNFSTNKVEEGK
AYQFRILAVNSEGVSDPLETEEVFAGNPIEPPGFASQPQVTDVTKEAVTITWNAPTQDGGAPVLGYIVER
RKKGSNLWVPVNKDPIQGTKCTVDGLLEDTEYEFRVIAVNKAGPGQPSVPSSSVVAKDPVKPPGLVQDLH
VSDSSNSSISLAWREPAEGDPPSGYILEMRAEDTKEWSKCTKIPISGTCYTVGGLIERQKYFFRIRAVNE
AGVGEPVELDKGVRAMPPPAAPKFDLSARLKSHMVVRAGTALCIHAAFSGSPPPDVIWQKDGVPTKGRET
ITKSKNHSQFLINSTKRSDSGVYRILLQNEFGEARYDIHVRVADFPRPPTNLRLFEEVPNTVTLTWNHSP
DVQEDGEAHYIIMKRDASTATWYTAAERVFSNKYTVTGLLPGRKYYFRVVARNEIGDSEPLDSRDTWLIN
KDQIQDLSAKLKPYEKKDWRHAPRFVTPLKPHTVLRGQDCTMTCAFLGNPRPTVTLYKGDVNITANSKFW
YNSTSGVCTLVIPTCTLKDSGDYSVLVENELGKDRSSCTLTVYDKDDKSVVASITESLQKKSKHLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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