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Report for CCDS41488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41488.1 Public Homo sapiens 10 CELF2 24 110 108 CCDS HistoryNCBI Gene:10659Re-query CCDS DB by CCDS ID:41488.1Re-query CCDS DB by GeneID:10659See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41488.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399850.7 ENSP00000382743.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399850.7Link to Ensembl Protein Viewer:ENSP00000382743.3Re-query CCDS DB by Nucleotide ID:ENST00000399850Re-query CCDS DB by Protein ID:ENSP00000382743
Original member Current member EBI ENST00000417956.6 ENSP00000404834.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417956.6Link to Ensembl Protein Viewer:ENSP00000404834.3Re-query CCDS DB by Nucleotide ID:ENST00000417956Re-query CCDS DB by Protein ID:ENSP00000404834
Original member Current member EBI ENST00000632728.1 ENSP00000487802.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000632728.1Link to Ensembl Protein Viewer:ENSP00000487802.1Re-query CCDS DB by Nucleotide ID:ENST00000632728Re-query CCDS DB by Protein ID:ENSP00000487802
Original member Current member EBI ENST00000638035.1 ENSP00000490401.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638035.1Link to Ensembl Protein Viewer:ENSP00000490401.1Re-query CCDS DB by Nucleotide ID:ENST00000638035Re-query CCDS DB by Protein ID:ENSP00000490401
Original member Current member NCBI NM_001025076.2 NP_001020247.1 Accepted alive Link to Nucleotide Sequence:NM_001025076.2Link to Protein Sequence:NP_001020247.1Re-query CCDS DB by Nucleotide ID:NM_001025076Re-query CCDS DB by Protein ID:NP_001020247Link to BLAST:NP_001020247.1
Original member Current member NCBI NM_001326318.2 NP_001313247.1 Accepted alive Link to Nucleotide Sequence:NM_001326318.2Link to Protein Sequence:NP_001313247.1Re-query CCDS DB by Nucleotide ID:NM_001326318Re-query CCDS DB by Protein ID:NP_001313247Link to BLAST:NP_001313247.1
Original member Current member NCBI NM_001326320.2 NP_001313249.1 Accepted alive Link to Nucleotide Sequence:NM_001326320.2Link to Protein Sequence:NP_001313249.1Re-query CCDS DB by Nucleotide ID:NM_001326320Re-query CCDS DB by Protein ID:NP_001313249Link to BLAST:NP_001313249.1
Original member Current member NCBI NM_001326324.2 NP_001313253.1 Accepted alive Link to Nucleotide Sequence:NM_001326324.2Link to Protein Sequence:NP_001313253.1Re-query CCDS DB by Nucleotide ID:NM_001326324Re-query CCDS DB by Protein ID:NP_001313253Link to BLAST:NP_001313253.1
Original member Current member NCBI NM_001326328.2 NP_001313257.1 Accepted alive Link to Nucleotide Sequence:NM_001326328.2Link to Protein Sequence:NP_001313257.1Re-query CCDS DB by Nucleotide ID:NM_001326328Re-query CCDS DB by Protein ID:NP_001313257Link to BLAST:NP_001313257.1
Original member Current member NCBI NM_001326330.2 NP_001313259.1 Accepted alive Link to Nucleotide Sequence:NM_001326330.2Link to Protein Sequence:NP_001313259.1Re-query CCDS DB by Nucleotide ID:NM_001326330Re-query CCDS DB by Protein ID:NP_001313259Link to BLAST:NP_001313259.1
Original member Current member NCBI NM_001326334.2 NP_001313263.1 Accepted alive Link to Nucleotide Sequence:NM_001326334.2Link to Protein Sequence:NP_001313263.1Re-query CCDS DB by Nucleotide ID:NM_001326334Re-query CCDS DB by Protein ID:NP_001313263Link to BLAST:NP_001313263.1
Original member Current member NCBI NM_001326345.2 NP_001313274.1 Accepted alive Link to Nucleotide Sequence:NM_001326345.2Link to Protein Sequence:NP_001313274.1Re-query CCDS DB by Nucleotide ID:NM_001326345Re-query CCDS DB by Protein ID:NP_001313274Link to BLAST:NP_001313274.1
Original member Current member NCBI NM_001326349.2 NP_001313278.1 Accepted alive Link to Nucleotide Sequence:NM_001326349.2Link to Protein Sequence:NP_001313278.1Re-query CCDS DB by Nucleotide ID:NM_001326349Re-query CCDS DB by Protein ID:NP_001313278Link to BLAST:NP_001313278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020247.1 490 O95319-2 490 100% 0 0
NP_001313247.1 490 O95319-2 490 100% 0 0
NP_001313249.1 490 O95319-2 490 100% 0 0
NP_001313253.1 490 O95319-2 490 100% 0 0
NP_001313257.1 490 O95319-2 490 100% 0 0
NP_001313259.1 490 O95319-2 490 100% 0 0
NP_001313263.1 490 O95319-2 490 100% 0 0
NP_001313274.1 490 O95319-2 490 100% 0 0
NP_001313278.1 490 O95319-2 490 100% 0 0

Chromosomal Locations for CCDS 41488.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 11165505 11165682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11217425 11217507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11249153 11249201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11257738 11257872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11266598 11266677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11270666 11270824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11275057 11275120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11288418 11288552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11314139 11314258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11321189 11321386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11325836 11325979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11328926 11329053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGAACGGAGCTTTGGATCACTCAGACCAACCAGACCCAGATGCCATTAAGATGTTTGTCGGACAGATCC
CCCGGTCATGGTCGGAAAAGGAGCTGAAAGAACTTTTTGAGCCTTACGGAGCCGTCTACCAGATCAACGT
CCTCCGGGACCGGAGTCAGAACCCTCCGCAGAGTAAAGGTTGTTGTTTCGTAACATTTTATACAAGAAAA
GCTGCACTTGAGGCCCAGAATGCACTGCACAATATTAAAACTTTACCTGGGATGCATCATCCCATTCAGA
TGAAACCTGCAGATAGTGAAAAGTCCAACGCTGTGGAAGACAGAAAATTGTTCATAGGAATGGTATCGAA
GAAATGTAATGAGAACGACATCAGGGTGATGTTCTCTCCATTTGGCCAGATAGAAGAATGCCGGATCCTC
CGGGGACCTGATGGGCTGAGTCGAGGCTGTGCGTTTGTCACATTTTCTACAAGGGCAATGGCACAGAATG
CAATCAAAGCCATGCATCAGTCTCAGACCATGGAGGGCTGCTCTTCACCTATCGTGGTGAAGTTTGCTGA
CACTCAGAAGGACAAAGAGCAAAGGCGCCTCCAGCAGCAGCTCGCTCAGCAGATGCAGCAGCTCAACACT
GCCACCTGGGGGAACCTGACAGGGCTGGGCGGACTGACCCCACAGTATCTGGCGCTCCTGCAGCAGGCCA
CCTCCTCCAGCAACCTGGGTGCGTTCAGCGGCATTCAACAAATGGCAGGCATGAATGCTTTACAGTTGCA
GAACCTGGCGACGCTGGCTGCTGCTGCAGCTGCGGCCCAGACCTCAGCCACCAGCACCAATGCAAACCCT
CTCTCTACCACGAGCAGCGCCCTGGGAGCCCTCACGAGTCCCGTGGCTGCTTCAACCCCCAACTCCACTG
CTGGTGCAGCCATGAACTCCTTGACCTCTCTCGGGACTCTGCAAGGACTGGCTGGAGCCACTGTTGGACT
GAATAATATTAATGCACTAGCAGTTGCTCAAATGCTCTCAGGTATGGCGGCTCTGAATGGAGGACTTGGC
GCCACAGGCTTGACGAATGGCACGGCTGGCACCATGGACGCCCTCACCCAGGCCTACTCAGGAATTCAAC
AGTACGCAGCCGCCGCGCTGCCCACTCTGTACAGCCAGAGCCTGCTGCAGCAGCAGAGCGCTGCAGGCAG
CCAGAAGGAAGGTCCAGAGGGGGCAAACCTCTTTATTTACCACCTTCCACAGGAATTTGGAGACCAGGAC
ATTCTGCAGATGTTCATGCCTTTTGGAAATGTTATCTCTGCTAAAGTCTTCATTGACAAACAGACCAATC
TGAGCAAGTGCTTTGGTTTTGTTAGCTACGACAATCCAGTCTCTGCACAAGCTGCTATCCAAGCTATGAA
TGGCTTTCAGATCGGCATGAAACGCTTGAAGGTGCAGCTGAAGCGTTCCAAAAACGACAGCAAACCTTAC
TGA

Translation (490 aa):
MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRK
AALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRIL
RGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNT
ATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANP
LSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLG
ATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD
ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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