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Report for CCDS41405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41405.1 Public Homo sapiens 1 ATP8B2 24 110 108 CCDS HistoryNCBI Gene:57198Re-query CCDS DB by CCDS ID:41405.1Re-query CCDS DB by GeneID:57198See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41405.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368487.7 ENSP00000357472.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368487.7Link to Ensembl Protein Viewer:ENSP00000357472.3Re-query CCDS DB by Nucleotide ID:ENST00000368487Re-query CCDS DB by Protein ID:ENSP00000357472
Original member Current member NCBI NM_001005855.2 NP_001005855.1 Accepted alive Link to Nucleotide Sequence:NM_001005855.2Link to Protein Sequence:NP_001005855.1Re-query CCDS DB by Nucleotide ID:NM_001005855Re-query CCDS DB by Protein ID:NP_001005855Link to BLAST:NP_001005855.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005855.1 387 P98198-4 387 100% 0 0

Chromosomal Locations for CCDS 41405.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 154328142 154328172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154330396 154330454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154330815 154330928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154331048 154331146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154331444 154331505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154331606 154331678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154331954 154332024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154332618 154332697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154334107 154334265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154334503 154334591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 154337348 154337674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGGCAGTGTGTGCAAAAAAGCGCCCCCCAGAAGAAGAAAGGAGGGCGCGGGCTAATGACCGAGAATACA
ATGAGAAATTCCAGTATGCGAGTAACTGCATCAAGACCTCCAAGTACAATATTCTCACCTTCCTGCCTGT
CAACCTCTTTGAGCAGTTCCAGGAAGTTGCCAACACTTACTTCCTGTTCCTCCTCATTCTGCAGTTGATC
CCCCAGATCTCTTCCCTGTCCTGGTTCACCACCATTGTGCCTTTGGTTCTTGTCCTCACCATCACAGCTG
TTAAAGATGCCACTGATGACTATTTCCGCCACAAGAGCGATAACCAGGTGAATAACCGCCAGTCTCAGGT
GCTGATCAATGGAATCCTCCAGCAGGAGCAGTGGATGAATGTCTGTGTTGGTGATATTATCAAGCTAGAA
AATAACCAGTTTGTGGCGGCGGATCTCCTCCTCCTTTCCAGCAGTGAGCCCCATGGGCTGTGTTACATAG
AGACAGCAGAACTTGATGGCGAGACCAACATGAAAGTACGTCAGGCGATTCCAGTCACCTCAGAATTGGG
AGACATCAGTAAGCTTGCCAAGTTTGACGGTGAAGTGATCTGTGAACCTCCCAACAACAAACTGGACAAA
TTCAGCGGAACCCTCTACTGGAAGGAAAATAAGTTCCCTCTGAGCAACCAGAACATGCTGCTGCGGGGCT
GTGTGCTGCGAAACACCGAGTGGTGCTTCGGGCTGGTCATCTTTGCAGGTCCCGACACTAAGCTGATGCA
AAACAGCGGCAGAACAAAGTTCAAAAGAACGAGTATCGATCGCCTAATGAATACCCTGGTGCTCTGGATT
TTTGGATTCCTGGTTTGCATGGGGGTGATCCTGGCCATTGGCAATGCCATCTGGGAGCACGAGGTGGGGA
TGCGTTTCCAGGTCTACCTGCCGTGGGATGAGGCAGTGGACAGTGCCTTCTTCTCTGGCTTCCTCTCCTT
CTGGTCCTACATCATCATCCTCAACACCGTTGTGCCCATTTCACTCTATGTCAGGTATGTGCCTTCTCTG
ACCTGGGGTCTCTCCAGGGAGTCAGGCGGTCCCATAGAACTTTTCTTTTCTATGAAGATGAAGTCCTTGA
GAAGTAACGAGAAGTCCTCTTCTTCCTGTACTGTAAACATTTGA

Translation (387 aa):
MAVCAKKRPPEEERRARANDREYNEKFQYASNCIKTSKYNILTFLPVNLFEQFQEVANTYFLFLLILQLI
PQISSLSWFTTIVPLVLVLTITAVKDATDDYFRHKSDNQVNNRQSQVLINGILQQEQWMNVCVGDIIKLE
NNQFVAADLLLLSSSEPHGLCYIETAELDGETNMKVRQAIPVTSELGDISKLAKFDGEVICEPPNNKLDK
FSGTLYWKENKFPLSNQNMLLRGCVLRNTEWCFGLVIFAGPDTKLMQNSGRTKFKRTSIDRLMNTLVLWI
FGFLVCMGVILAIGNAIWEHEVGMRFQVYLPWDEAVDSAFFSGFLSFWSYIIILNTVVPISLYVRYVPSL
TWGLSRESGGPIELFFSMKMKSLRSNEKSSSSCTVNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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