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Report for CCDS41336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41336.1 Public Homo sapiens 1 SHISAL2A 24 110 108 CCDS HistoryNCBI Gene:348378Re-query CCDS DB by CCDS ID:41336.1Re-query CCDS DB by GeneID:348378See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517870.2 ENSP00000429726.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000517870.2Link to Ensembl Protein Viewer:ENSP00000429726.1Re-query CCDS DB by Nucleotide ID:ENST00000517870Re-query CCDS DB by Protein ID:ENSP00000429726
Original member Current member NCBI NM_001042693.3 NP_001036158.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042693.3Link to Protein Sequence:NP_001036158.1Re-query CCDS DB by Nucleotide ID:NM_001042693Re-query CCDS DB by Protein ID:NP_001036158Link to BLAST:NP_001036158.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036158.1 190 Q6UWV7-1 190 100% 0 0

Chromosomal Locations for CCDS 41336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 52633494 52633675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52642863 52643002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52656790 52657040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGAGCGGCGCCTGCACGAGCTACGTGAGCGCAGAGCAGGAGGTGGTGCGCGGCTTCAGCTGCCCGCGGC
CGGGGGGCGAGGCGGCCGCTGTCTTCTGCTGCGGCTTCCGCGACCACAAGTACTGCTGCGACGACCCGCA
CAGCTTCTTCCCCTACGAGCACAGCTACATGTGGTGGCTCAGCATTGGCGCTCTCATAGGCCTGTCCGTA
GCAGCAGTGGTTCTTCTCGCCTTCATTGTTACCGCCTGTGTGCTCTGCTACCTGTTCATCAGCTCTAAGC
CCCACACAAAGTTGGACCTGGGCTTGAGCTTACAGACAGCAGGCCCTGAGGAGGTTTCTCCTGACTGCCA
AGGTGTGAACACAGGCATGGCGGCAGAAGTGCCAAAAGTGAGCCCTCTCCAGCAGAGTTACTCCTGCTTG
AACCCGCAGCTGGAGAGCAATGAGGGGCAGGCTGTGAACTCCAAACGCCTCCTCCATCATTGCTTCATGG
CCACAGTGACCACCAGTGACATTCCAGGCAGCCCTGAGGAAGCCTCTGTACCCAACCCTGACCTATGTGG
ACCAGTCCCATAA

Translation (190 aa):
MSGACTSYVSAEQEVVRGFSCPRPGGEAAAVFCCGFRDHKYCCDDPHSFFPYEHSYMWWLSIGALIGLSV
AAVVLLAFIVTACVLCYLFISSKPHTKLDLGLSLQTAGPEEVSPDCQGVNTGMAAEVPKVSPLQQSYSCL
NPQLESNEGQAVNSKRLLHHCFMATVTTSDIPGSPEEASVPNPDLCGPVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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