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Report for CCDS41173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41173.1 Public Mus musculus X Alas2 23 108 98 CCDS HistoryNCBI Gene:11656Re-query CCDS DB by CCDS ID:41173.1Re-query CCDS DB by GeneID:11656See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066337.12 ENSMUSP00000066040.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066337.12Link to Ensembl Protein Viewer:ENSMUSP00000066040.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066337Re-query CCDS DB by Protein ID:ENSMUSP00000066040
Original member NCBI NM_009653.3 NP_033783.1 Updated not alive Link to Nucleotide Sequence:NM_009653.3Link to Protein Sequence:NP_033783.1Re-query CCDS DB by Nucleotide ID:NM_009653Re-query CCDS DB by Protein ID:NP_033783
Current member NCBI NM_009653.4 NP_033783.1 Accepted alive Link to Nucleotide Sequence:NM_009653.4Link to Protein Sequence:NP_033783.1Re-query CCDS DB by Nucleotide ID:NM_009653Re-query CCDS DB by Protein ID:NP_033783Link to BLAST:NP_033783.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033783.1 587 P08680 587 100% 0 0

Chromosomal Locations for CCDS 41173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 150552164 150552344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150552959 150553081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150553933 150554043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150557186 150557408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150557939 150558123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150560734 150560913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150563761 150563925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150565007 150565275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150566501 150566663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150570328 150570491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGGTGGCAGCAGCTATGTTGCTACGGTCCTGTCCAGTGCTCTCTCAGGGCCCCACAGGCCTCCTGGGCA
AAGTGGCTAAAACCTACCAGTTCCTATTTAGTATTGGACGCTGCCCCATCCTGGCCACTCAAGGACCAAC
CTGTTCTCAAATCCATCTTAAGGCAACCAAGGCTGGAGGAGACTCTCCATCTTGGGCTAAGAGCCATTGT
CCTTTCATGCTGTCAGAACTCCAAGACAGGAAGAGCAAGATTGTGCAGAGGGCAGCTCCAGAAGTTCAAG
AGGATGTCAAGACTTTCAAGACAGACCTGCTGAGCACCATGGATTCAACCACCCGAAGCCATTCATTTCC
TAGTTTCCAGGAGCCAGAGCAGACTGAAGGGGCAGTTCCCCACCTGATTCAGAACAATATGACTGGAAGC
CAGGCTTTCGGTTATGACCAATTTTTCAGAGACAAGATCATGGAGAAGAAACAGGACCACACCTACCGTG
TGTTCAAGACTGTGAATCGTTGGGCTAATGCCTACCCCTTTGCCCAACACTTCTCCGAGGCATCTATGGC
ATCAAAGGATGTTTCTGTTTGGTGTAGTAATGACTATTTGGGCATAAGCAGACACCCTCGTGTCTTGCAG
GCCATAGAGGAGACCCTGAAGAATCATGGAGCTGGAGCTGGGGGCACTCGCAATATCTCAGGTACCAGCA
AGTTTCATGTGGAGCTTGAACAGGAGCTGGCTGAACTACACCAGAAAGACTCAGCTCTGCTCTTCTCCTC
CTGTTTTGTGGCCAATGATTCTACTCTCTTTACACTGGCCAAGCTTCTGCCAGGGTGTGAGATCTACTCA
GATGCAGGCAATCATGCCTCCATGATCCAAGGCATTCGCAACAGTGGTGCAGCCAAGTTTGTCTTCAGAC
ACAATGACCCAGGCCACCTGAAGAAACTTCTCGAGAAGTCTGATCCCAAGACACCAAAAATTGTGGCTTT
TGAGACTGTTCATTCCATGGATGGTGCCATCTGTCCTCTGGAGGAATTGTGTGATGTGGCCCACCAGTAT
GGAGCCCTGACCTTCGTAGATGAAGTCCATGCTGTAGGACTGTATGGAGCCCGGGGTGCAGGTATCGGGG
AGCGTGATGGAATTATGCACAAGCTTGACATCATCTCTGGAACTCTTGGCAAGGCCTTTGGTTGCGTCGG
TGGCTATATAGCCAGCACTCGGGACTTGGTGGACATGGTGCGCTCCTACGCTGCAGGCTTCATCTTTACC
ACTTCACTGCCTCCCATGGTGCTCTCTGGGGCTCTAGAATCTGTGCGCCTACTCAAGGGAGAGGAGGGTC
AAGCCCTGAGGCGGGCACACCAGCGCAATGTCAAACACATGCGCCAGCTGCTAATGGACAGGGGCTTTCC
TGTTATCCCCTGTCCCAGCCACATCATCCCCATCAGGGTGGGTAATGCAGCACTCAACAGCAAGATCTGT
GATCTTCTGCTCTCCAAGCACAGCATCTATGTGCAGGCCATCAACTACCCAACTGTGCCTCGTGGTGAGG
AGCTACTGCGCTTGGCCCCCTCCCCCCACCACAGCCCTCAGATGATGGAAAACTTTGTGGAGAAGCTGCT
GCTGGCCTGGACTGAGGTGGGGCTGCCCCTCCAAGATGTGTCTGTGGCTGCATGCAACTTCTGTCATCGT
CCTGTGCACTTTGAACTTATGAGCGAGTGGGAGCGATCCTACTTTGGGAACATGGGACCCCAATATGTTA
CCACCTATGCTTAA

Translation (587 aa):
MVAAAMLLRSCPVLSQGPTGLLGKVAKTYQFLFSIGRCPILATQGPTCSQIHLKATKAGGDSPSWAKSHC
PFMLSELQDRKSKIVQRAAPEVQEDVKTFKTDLLSTMDSTTRSHSFPSFQEPEQTEGAVPHLIQNNMTGS
QAFGYDQFFRDKIMEKKQDHTYRVFKTVNRWANAYPFAQHFSEASMASKDVSVWCSNDYLGISRHPRVLQ
AIEETLKNHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKLLPGCEIYS
DAGNHASMIQGIRNSGAAKFVFRHNDPGHLKKLLEKSDPKTPKIVAFETVHSMDGAICPLEELCDVAHQY
GALTFVDEVHAVGLYGARGAGIGERDGIMHKLDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFT
TSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGFPVIPCPSHIIPIRVGNAALNSKIC
DLLLSKHSIYVQAINYPTVPRGEELLRLAPSPHHSPQMMENFVEKLLLAWTEVGLPLQDVSVAACNFCHR
PVHFELMSEWERSYFGNMGPQYVTTYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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