NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS41123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41123.1 Public Mus musculus X Rpl36a 23 108 98 CCDS HistoryNCBI Gene:19982Re-query CCDS DB by CCDS ID:41123.1Re-query CCDS DB by GeneID:19982See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113211.7 ENSMUSP00000108837.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113211.7Link to Ensembl Protein Viewer:ENSMUSP00000108837.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113211Re-query CCDS DB by Protein ID:ENSMUSP00000108837
Original member Current member NCBI NM_019865.5 NP_063918.1 Accepted alive Link to Nucleotide Sequence:NM_019865.5Link to Protein Sequence:NP_063918.1Re-query CCDS DB by Nucleotide ID:NM_019865Re-query CCDS DB by Protein ID:NP_063918Link to BLAST:NP_063918.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_063918.1 106 P83882 106 100% 0 0

Chromosomal Locations for CCDS 41123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134585717 134585719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134586078 134586183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134586511 134586578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134587451 134587573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134587937 134587957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGGTGAACGTGCCTAAAACCCGCCGGACATTCTGCAAGAAATGTGGGAAGCACCAACCCCACAAGGTGA
CACAGTACAAGAAGGGCAAGGATTCTTTGTATGCCCAGGGAAAGCGGCGTTACGACAGGAAACAGAGTGG
CTATGGTGGGCAGACTAAGCCTATTTTCCGCAAAAAGGCTAAAACTACAAAGAAGATTGTGCTGAGACTG
GAGTGCGTTGAGCCCAACTGCAGATCTAAGAGGATGCTGGCTATTAAGAGATGCAAGCATTTTGAATTGG
GAGGCGACAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAA

Translation (106 aa):
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRL
ECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH