NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40960.1 Public Mus musculus X Zdhhc9 23 108 98 CCDS HistoryNCBI Gene:208884Re-query CCDS DB by CCDS ID:40960.1Re-query CCDS DB by GeneID:208884See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037960.10 ENSMUSP00000044734.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037960.10Link to Ensembl Protein Viewer:ENSMUSP00000044734.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000037960Re-query CCDS DB by Protein ID:ENSMUSP00000044734
Original member Current member EBI ENSMUST00000088935.3 ENSMUSP00000086325.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088935.3Link to Ensembl Protein Viewer:ENSMUSP00000086325.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088935Re-query CCDS DB by Protein ID:ENSMUSP00000086325
Original member Current member NCBI NM_172465.4 NP_766053.1 Accepted alive Link to Nucleotide Sequence:NM_172465.4Link to Protein Sequence:NP_766053.1Re-query CCDS DB by Nucleotide ID:NM_172465Re-query CCDS DB by Protein ID:NP_766053Link to BLAST:NP_766053.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766053.1 364 P59268 364 100% 0 0

Chromosomal Locations for CCDS 40960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48173525 48173641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48178040 48178136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48178509 48178612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48181247 48181349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48182099 48182147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48183021 48183158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48191221 48191379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48194560 48194720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48206668 48206834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGTCTGTGATGGTGGTAAGAAAGAAGGTGACACGGAAATGGGAGAAACTCCCAGGCAGGAACACCTTCT
GCTGTGATGGCCGCGTCATGATGGCCCGGCAAAAGGGCATCTTCTACCTGACCCTCTTCCTCATCCTGGG
GACATGTACACTCTTCTTTGCCTTCGAGTGTCGCTACCTGGCTGTTCAGCTGTCTCCTGCCATTCCTGTG
TTTGCCGCTATGCTCTTTCTTTTCTCCATGGCCACGCTGTTGAGGACAAGTTTCAGTGACCCTGGAGTGA
TTCCTCGAGCACTACCAGATGAAGCAGCTTTCATAGAAATGGAAATAGAAGCCACCAATGGTGCCGTGCC
ACAGGGCCAGCGACCACCTCCTCGTATTAAGAATTTCCAGATAAACAACCAGATTGTGAAACTGAAATAC
TGTTATACATGCAAGATCTTCCGGCCTCCCAGGGCCTCCCATTGTAGCATCTGTGACAACTGTGTGGAGC
GCTTCGACCATCACTGCCCCTGGGTGGGAAACTGTGTTGGAAAGAGGAACTACCGCTACTTCTACCTCTT
CATCCTCTCTCTCTCCCTCCTCACAATTTATGTCTTCGCCTTTAACATCGTCTATGTGGCCCTCAAATCC
TTGAAAATTGGCTTCCTGGAGACACTGAAAGAAACGCCTGGAACTGTTCTGGAAGTACTCATTTGCTTCT
TCACTCTCTGGTCTGTTGTGGGGCTGACTGGATTTCACACATTCCTTGTGGCTCTCAATCAGACCACCAA
TGAAGACATCAAAGGATCATGGACAGGGAAGAATCGTGTGCAGAATCCGTACAGCCACGGCAACATTGTG
AAGAACTGCTGTGAAGTGCTTTGTGGCCCCTTGCCCCCCAGTGTCCTGGATCGAAGGGGTATTTTGCCAC
TGGAGGAAAGTGGAAGTCGACCTCCAAGTACTCAAGAGACCAGCAGTAGCCTGTTGCCACAGAGCCCAGC
CTCCACAGAGCATATGAACTCTAATGAGATGGCAGAGGACACCAGCATTCCTGAAGAGATGCCACCTCCA
GAACCCCCAGAGCCACCACAGGAGGCATCCGAAGCTGAGAAGTAG

Translation (364 aa):
MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFECRYLAVQLSPAIPV
FAAMLFLFSMATLLRTSFSDPGVIPRALPDEAAFIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKY
CYTCKIFRPPRASHCSICDNCVERFDHHCPWVGNCVGKRNYRYFYLFILSLSLLTIYVFAFNIVYVALKS
LKIGFLETLKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALNQTTNEDIKGSWTGKNRVQNPYSHGNIV
KNCCEVLCGPLPPSVLDRRGILPLEESGSRPPSTQETSSSLLPQSPASTEHMNSNEMAEDTSIPEEMPPP
EPPEPPQEASEAEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH