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Report for CCDS4063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4063.1 Public Homo sapiens 5 COX7C 24 110 108 CCDS HistoryNCBI Gene:1350Re-query CCDS DB by CCDS ID:4063.1Re-query CCDS DB by GeneID:1350See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4063.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000247655.4 ENSP00000247655.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000247655.4Link to Ensembl Protein Viewer:ENSP00000247655.3Re-query CCDS DB by Nucleotide ID:ENST00000247655Re-query CCDS DB by Protein ID:ENSP00000247655
Original member Current member EBI ENST00000509578.1 ENSP00000425759.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509578.1Link to Ensembl Protein Viewer:ENSP00000425759.1Re-query CCDS DB by Nucleotide ID:ENST00000509578Re-query CCDS DB by Protein ID:ENSP00000425759
Original member Current member NCBI NM_001867.3 NP_001858.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001867.3Link to Protein Sequence:NP_001858.1Re-query CCDS DB by Nucleotide ID:NM_001867Re-query CCDS DB by Protein ID:NP_001858Link to BLAST:NP_001858.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001858.1 63 P15954 63 100% 0 0

Chromosomal Locations for CCDS 4063.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86618056 86618130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86619353 86619469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (192 nt):
ATGTTGGGCCAGAGCATCCGGAGGTTCACAACCTCTGTGGTCCGTAGGAGCCACTATGAGGAGGGCCCTG
GGAAGAATTTGCCATTTTCAGTGGAAAACAAGTGGTCGTTACTAGCTAAGATGTGTTTGTACTTTGGATC
TGCATTTGCTACACCCTTCCTTGTAGTAAGACACCAACTGCTTAAAACATAA

Translation (63 aa):
MLGQSIRRFTTSVVRRSHYEEGPGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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