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Report for CCDS40626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40626.1 Public Mus musculus 9 Ppp2r1b 23 108 98 CCDS HistoryNCBI Gene:73699Re-query CCDS DB by CCDS ID:40626.1Re-query CCDS DB by GeneID:73699See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40626.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114437.8 ENSMUSP00000110080.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114437.8Link to Ensembl Protein Viewer:ENSMUSP00000110080.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114437Re-query CCDS DB by Protein ID:ENSMUSP00000110080
Original member Current member NCBI NM_028614.3 NP_082890.2 Accepted alive Link to Nucleotide Sequence:NM_028614.3Link to Protein Sequence:NP_082890.2Re-query CCDS DB by Nucleotide ID:NM_028614Re-query CCDS DB by Protein ID:NP_082890Link to BLAST:NP_082890.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082890.2 601 Q7TNP2 601 100% 0 0

Chromosomal Locations for CCDS 40626.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 50856985 50857098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50857836 50857926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50858851 50858951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50861531 50861763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50862366 50862513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50866444 50866599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50866828 50866942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50867326 50867396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50867663 50867797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50870063 50870236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50873647 50873707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50878038 50878192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50878698 50878840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50879210 50879301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50879839 50879855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1806 nt):
ATGGCGGGCGCAGCAGGGCCAGGGTCCGGTCCGGGGGCAGCGGGTGGAGATGGAGACGATTCGCTCTACC
CGATCGCGGTTTTAATCGACGAGCTCCGCAATGAGGACGTGCAGCTCCGTCTCAACAGTATTAAGAAGTT
ATCAACTATAGCTCTAGCACTCGGGGTAGAAAGGACTCGAACGGAACTGCTGCCTTTCCTTACAGATACT
ATTTATGATGAAGATGAGGTGCTGTTAGCTCTCGCCGAGCAGCTGGGAAATTTCACTGGTTTGGTGGGCG
GTCCTGACTTTGCCCACTGTCTGCTGCCTCCTTTGGAAAGTTTGGCTACGGTGGAGGAGACTGTCGTTCG
AGACAAGGCTGTGGAGTCGCTGAGGCAGATCTCGCAGGAGCACACTCCTGTTGCCCTTGAAGCTCATTTT
GTGCCTCTGGTGAAGCGCCTGGCAAGCGGGGACTGGTTCACGTCGCGCACGTCTGCATGTGGCTTGTTCA
GCGTTTGCTATCCCAGAGCTTCAAATGCTGTCAAGGCAGAGATTCGACAGCACTTCCGTTCTCTCTGCTC
GGATGATACACCAATGGTGCGACGTGCTGCTGCTTCCAAATTGGGTGAATTTGCAAAAGTTTTGGAATTA
GACAGTGTGAAAACTGAAATTGTCCCATTGTTCACGAATTTGGCTTCAGATGAACAGGACTCTGTGCGGC
TGCTAGCTGTGGAAGCCTGCGTCAGCATTGCCCAGTTACTGTCTCAGGAGGACCTGGAAGCCTTGGTAAT
GCCTACACTTCGACAAGCAGCAGAAGATAAGTCCTGGCGGGTTCGATATATGGTGGCTGACAAGTTTTCA
GAGCTCCAGAAAGCGGTGGGCCCTAAGATTGCACTCAGCGACCTCATCCCCGCCTTCCAGAGCCTCCTCC
GAGACTGCGAAGCTGAAGTCCGAGCAGCCGCTGCCCACAAAGTAAGAGAGCTTTGTGAGAACCTGCCCGC
TGAAGGTAGAGAGACTGTAATTATGAATCAAATCCTGCCCTATATAAAGGAATTAGTGTCTGATACCAAC
CAACATGTCAAGTCAGCGCTAGCTTCTGTAATTATGGGATTATCTACAGTTTTGGGCAAAGAGAATACCA
TTGAACATCTTCTGCCTCTATTTTTAGCTCAGTTAAAGGACGAGTGTCCAGAAGTTCGTTTAAATATCAT
CTCCAATTTGGATTGTGTGAATGAAGTGATTGGAATCCGTCAGCTCTCTCAGTCTCTCCTTCCGGCCATA
GTGGAACTGGCTGAAGATGCCAAGTGGAGGGTCCGCCTGGCTATCATTGAGTACATGCCGCTGCTGGCTG
GCCAGCTGGGTGTGGAGTTCTTTGATGAAAAACTCAATTCTTTGTGTATGGCCTGGCTTGTGGATCATGT
CTATGCCATTCGGGAGGCAGCCACCAACAACCTCATGAAGTTAGTCCAGAAGTTCGGTACAGAGTGGGCC
CAGAATACCATTGTCCCTAAAGTGTTGGTAATGGCAAATGACCCTAACTACTTACACAGAATGACCACGC
TCTTCTGCATTAATGCACTGTCTGAAGCCTGTGGTAAGGAAATAACCACTAAGCAAATGTTGCCCATCGT
GTTGAAAATGGCAGGAGACCAGGTAGCAAATGTCCGCTTCAATGTGGCCAAATCACTGCAGAAAATTGGA
CCGATTCTAGACACCAACGCCTTGCAGGGGGAAGTGAAGCCGGTGCTGCAGAAATTGGGTCAGGACGAAG
ACATGGATGTCAAATATTTTGCACAGGAAGCTATAAGTGTTCTTGCCTTGGCATAA

Translation (601 aa):
MAGAAGPGSGPGAAGGDGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDT
IYDEDEVLLALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEAHF
VPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAASKLGEFAKVLEL
DSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQEDLEALVMPTLRQAAEDKSWRVRYMVADKFS
ELQKAVGPKIALSDLIPAFQSLLRDCEAEVRAAAAHKVRELCENLPAEGRETVIMNQILPYIKELVSDTN
QHVKSALASVIMGLSTVLGKENTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAI
VELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWA
QNTIVPKVLVMANDPNYLHRMTTLFCINALSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIG
PILDTNALQGEVKPVLQKLGQDEDMDVKYFAQEAISVLALA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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