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Report for CCDS40548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40548.1 Public Mus musculus 9 Mrpl4 23 108 98 CCDS HistoryNCBI Gene:66163Re-query CCDS DB by CCDS ID:40548.1Re-query CCDS DB by GeneID:66163See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003386.6 ENSMUSP00000003386.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003386.6Link to Ensembl Protein Viewer:ENSMUSP00000003386.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000003386Re-query CCDS DB by Protein ID:ENSMUSP00000003386
Original member Current member NCBI NM_023167.2 NP_075656.2 Accepted alive Link to Nucleotide Sequence:NM_023167.2Link to Protein Sequence:NP_075656.2Re-query CCDS DB by Nucleotide ID:NM_023167Re-query CCDS DB by Protein ID:NP_075656Link to BLAST:NP_075656.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075656.2 294 Q9DCU6 294 100% 0 0

Chromosomal Locations for CCDS 40548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21002941 21002997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21003084 21003150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21003254 21003404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21006134 21006185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21006827 21006944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21007434 21007540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21007631 21007740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21007823 21007899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21008494 21008639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGCTGCGGTTGTTCCAGGCCGCTTCCCGGGCCTCGCTTCGACTCTCTGGCTCCCGGGTCATCCACTCTC
TAGCGGAAGGCGCGGAGCGGCCGGCCGAGATTTCAGAGCCGCGAGATAGCGCTGGTCTCCTAGATCCTGT
TTTGCGCAAGTGTGAGCTCCGGATCCCAGTGCACCGGCGTCCGGTGCAAGCCTGGGTCGAGTCTCTCCGA
GGCTTTGAGCAGGAGCGCATCGGCCTGGCGGAGCTGCACCCCGACGTGTTTGCAACGGCGCCTCGGCTGG
ACATTGTGCACCAGGTCGCCATCTGGCAGAGGAACTTCAGGAGAATCAGCTATGCTAACACCAAGACCAG
GGCTGAGGTGAGTGGTGGTGGCCGCAAGCCCTGGCAACAGAAAGGCAGTGGCCGTGCTCGGCATGGCAGC
ATCCGTTCTCCCTTATGGCGAGGAGGAGGTGTAGCCCATGGTCCCCGGGGTCCTACAAGTTACTACTACA
TGTTGCCCATGAAAGTGCGGGCACTGGGCCTCAAGGTGGCCTTGACTGTCAAGCTCATGCAGGATGATCT
ACACATTGTGGATTCCCTGGAGCTACCCACGGCAGACCCCCAGTACCTGACAGAGTTGGCCCAGTACCGC
CACTGGGGGAGTTCCGTGCTCCTTGTAGACTTAACACATGAAGAGATGCCCAAGAATGTCGTGGCAGCCA
CTTCAGGGCTCAACAGTTTCAACCTGATCCCCGCAGTTGGCCTGAATGTGTACAGCATGCTCAAGCACCA
GACTCTGGTCCTCACCCTGCCTTCCGTCGCCTTCCTGGAGGACAAGCTACTCTGGCAGGACTCAAGATAC
ACTCCGCTCTACCCCTTCCGCTTGCCCTACAGTGACTTCCCCTAA

Translation (294 aa):
MLRLFQAASRASLRLSGSRVIHSLAEGAERPAEISEPRDSAGLLDPVLRKCELRIPVHRRPVQAWVESLR
GFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGS
IRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYR
HWGSSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKLLWQDSRY
TPLYPFRLPYSDFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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