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Report for CCDS40197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40197.1 Public Mus musculus 7 Nap1l4 23 108 98 CCDS HistoryNCBI Gene:17955Re-query CCDS DB by CCDS ID:40197.1Re-query CCDS DB by GeneID:17955See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40197.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072727.6 ENSMUSP00000072510.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072727.6Link to Ensembl Protein Viewer:ENSMUSP00000072510.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072727Re-query CCDS DB by Protein ID:ENSMUSP00000072510
Original member Current member NCBI NM_008672.3 NP_032698.1 Accepted alive Link to Nucleotide Sequence:NM_008672.3Link to Protein Sequence:NP_032698.1Re-query CCDS DB by Nucleotide ID:NM_008672Re-query CCDS DB by Protein ID:NP_032698Link to BLAST:NP_032698.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032698.1 375 Q78ZA7 375 100% 0 0

Chromosomal Locations for CCDS 40197.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143518880 143518885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143520384 143520440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143521401 143521430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143524161 143524280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143524694 143524716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143527166 143527311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143529418 143529557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143532309 143532380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143534286 143534417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143535651 143535737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143535898 143536039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143538217 143538316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143540188 143540246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143541748 143541761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGGCAGAAAACAGTCTTTCAGATGGAGGCCCTGCAGATTCTGTGGAAGCTGCTAAAAATGCCAGTAATA
CAGAAAAACTCACAGACCAGGTGATGCAGAACCCACAAGTGCTGGCAGCTTTGCAGGAACGTCTTGACAA
CGTCTCTCACACTCCTTCTAGTTACATAGAAACTTTACCTAAAGCTGTCAAAAGAAGAATTAATGCCCTG
AAGCAGCTCCAGGTGAGGTGTGCGCACATAGAAGCTAAGTTCTACGAGGAAGTTCATGACCTGGAGAGGA
AGTATGCAGCCTTGTACCAGCCTCTATTTGACAAGAGAAGAGAATTCATCACTGGTGACGTGGAGCCCAC
AGATGCAGAGTCAGCGTGGCACAGTGAGAATGAGGAGGAGGACAAGTTGGCTGGAGATATGAAGAATAAA
GTAGTCATAGCTGAGAAAGAAGCAGCAACAGTGGAAGAGCTGAACCCCAAAGGCATCCCTGAGTTCTGGT
TCACCATCTTCAGAAATGTGGACATGCTTAGTGAGCTGGTGCAGGAATATGATGAACCGATCTTGAAACA
TCTGCAGGATATTAAAGTGAAGTTTTCAGACCCTGGACAACCTATGTCTTTTGTGCTAGAGTTTCACTTT
GAACCCAACGACTACTTCACCAATCCTGTCCTGACGAAAACGTACAAGATGAAATCAGAGCCAGACAAGG
CCGACCCGTTTTCTTTTGAAGGTCCTGAAATTGTGGACTGTGATGGGTGTACAATAGACTGGAAGAAAGG
AAAAAATGTCACAGTCAAAACCATCAAGAAAAAGCAGAAGCACAAGGGCCGGGGCACCGTACGAACCATC
ACCAAGCAAGTGCCCAATGAGTCCTTCTTCAACTTCTTCAGCCCCCTGAAAGCCTCTGGAGATGGAGAAT
CTCTGGATGAAGATTCCGAGTTCACCTTAGCCTCTGACTTTGAAATTGGGCACTTTTTTCGTGAGCGCAT
CGTGCCACGGGCTGTCCTCTACTTCACTGGGGAGGCCATAGAGGATGATGACAATTTTGAAGAAGGCGAG
GAAGGTGAAGAGGAGGAATTGGAAGGTGATGAAGAAGGAGAAGATGAGGATGATGCTGATGTTAACCCCA
AGGTGTAA

Translation (375 aa):
MAENSLSDGGPADSVEAAKNASNTEKLTDQVMQNPQVLAALQERLDNVSHTPSSYIETLPKAVKRRINAL
KQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESAWHSENEEEDKLAGDMKNK
VVIAEKEAATVEELNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHF
EPNDYFTNPVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTI
TKQVPNESFFNFFSPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGE
EGEEEELEGDEEGEDEDDADVNPKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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