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Report for CCDS3998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3998.1 Public Homo sapiens 5 CENPH 24 110 108 CCDS HistoryNCBI Gene:64946Re-query CCDS DB by CCDS ID:3998.1Re-query CCDS DB by GeneID:64946See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283006.7 ENSP00000283006.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283006.7Link to Ensembl Protein Viewer:ENSP00000283006.2Re-query CCDS DB by Nucleotide ID:ENST00000283006Re-query CCDS DB by Protein ID:ENSP00000283006
Original member Current member NCBI NM_022909.4 NP_075060.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022909.4Link to Protein Sequence:NP_075060.1Re-query CCDS DB by Nucleotide ID:NM_022909Re-query CCDS DB by Protein ID:NP_075060Link to BLAST:NP_075060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075060.1 247 Q9H3R5 247 100% 0 0

Chromosomal Locations for CCDS 3998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 69189635 69189768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69191795 69191850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69194647 69194695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69195717 69195791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69197053 69197109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69202506 69202569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69202919 69202970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69208196 69208359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69209707 69209799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGAGGAGCAGCCCCAGATGCAAGACGCCGACGAGCCCGCGGACTCCGGAGGGGAAGGCCGGGCAGGCG
GGCCACCGCAGGTCGCCGGCGCCCAGGCGGCGTGCAGCGAGGACCGCATGACCCTGCTCCTCAGGCTGAG
AGCACAGACAAAACAACAACTCTTAGAATATAAATCAATGGTTGATGCAAGTGAAGAAAAAACTCCAGAA
CAAATTATGCAAGAAAAGCAAATCGAAGCTAAAATTGAAGACCTGGAAAATGAAATTGAAGAGGTAAAAG
TTGCTTTTGAGATAAAAAAGCTTGCATTAGACAGGATGAGACTTTCAACTGCACTTAAAAAAAACCTGGA
GAAAATTAGCAGACAGTCTAGTGTGCTCATGGATAACATGAAACACCTATTAGAGCTAAATAAATTAATA
ATGAAATCACAGCAGGAATCTTGGGATTTAGAGGAAAAACTGCTTGATATTAGAAAGAAGAGATTGCAAT
TAAAACAAGCTTCAGAAAGTAAGCTTTTAGAAATACAGACTGAAAAGAACAAACAGAAGATTGATTTGGA
CAGTATGGAAAACTCAGAGAGGATAAAGATCATACGACAAAACCTACAGATGGAGATAAAAATTACTACT
GTTATTCAACATGTGTTCCAGAACCTTATTTTGGGGAGTAAAGTCAATTGGGCAGAGGATCCTGCCCTTA
AGGAAATTGTTCTGCAGCTTGAGAAGAATGTTGACATGATGTAA

Translation (247 aa):
MEEQPQMQDADEPADSGGEGRAGGPPQVAGAQAACSEDRMTLLLRLRAQTKQQLLEYKSMVDASEEKTPE
QIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKNLEKISRQSSVLMDNMKHLLELNKLI
MKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEIQTEKNKQKIDLDSMENSERIKIIRQNLQMEIKITT
VIQHVFQNLILGSKVNWAEDPALKEIVLQLEKNVDMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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