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Report for CCDS39883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39883.1 Public Mus musculus 7 Kirrel2 23 108 98 CCDS HistoryNCBI Gene:243911Re-query CCDS DB by CCDS ID:39883.1Re-query CCDS DB by GeneID:243911See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045817.13 ENSMUSP00000039395.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045817.13Link to Ensembl Protein Viewer:ENSMUSP00000039395.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045817Re-query CCDS DB by Protein ID:ENSMUSP00000039395
Original member Current member NCBI NM_172898.3 NP_766486.1 Accepted alive Link to Nucleotide Sequence:NM_172898.3Link to Protein Sequence:NP_766486.1Re-query CCDS DB by Nucleotide ID:NM_172898Re-query CCDS DB by Protein ID:NP_766486Link to BLAST:NP_766486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766486.1 700 Q7TSU7-1 700 100% 0 0

Chromosomal Locations for CCDS 39883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30448119 30448454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30449837 30449902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30450378 30450478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30450802 30450900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30452681 30452900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30453054 30453154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30453412 30453544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30453636 30453763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30454014 30454162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30454238 30454343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30454509 30454659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30455172 30455332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30455465 30455614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30456420 30456569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30456798 30456849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGCTGGCCTCCGCCCTCCTCGTTTTCCTTTGCTGTTTCAAAGGACATGCAGGCTCATCGCCCCATTTCC
TACAACAGCCAGAGGACATGGTGGTGCTGTTGGGGGAGGAAGCCCGGCTGCCCTGCGCTCTGGGCGCGTA
CAGGGGGCTCGTGCAGTGGACTAAGGATGGGCTGGCTCTAGGGGGCGAAAGAGACCTTCCAGGGTGGTCC
CGGTACTGGATATCGGGGAATTCAGCCAGTGGCCAGCATGACCTCCACATTAAGCCTGTGGAATTGGAAG
ATGAGGCATCGTATGAGTGCCAGGCTTCGCAAGCAGGTCTCCGATCACGACCAGCCCAACTGCACGTGAT
GGTCCCCCCAGAAGCTCCCCAGGTACTAGGCGGCCCCTCTGTGTCTCTGGTTGCTGGAGTTCCTGGAAAT
CTGACCTGTCGGAGTCGTGGGGATTCACGACCTGCCCCTGAACTACTGTGGTTCCGAGATGGGATCCGGC
TGGATGGGAGCAGCTTCCACCAGACCACGCTGAAGGACAAGGCCACTGGAACAGTGGAAAACACCTTATT
CCTGACCCCTTCCAGTCATGATGATGGTGCCACCTTGATCTGCAGAGCGCGAAGCCAGGCCCTGCCCACA
GGGAGGGACACAGCTGTTACACTGAGCCTTCAGTATCCCCCAATGGTGACTCTGTCTGCTGAGCCCCAGA
CTGTGCAGGAGGGAGAGAAGGTGACTTTCCTGTGTCAAGCCACTGCCCAGCCTCCTGTCACTGGCTACAG
GTGGGCGAAGGGGGGATCCCCGGTGCTTGGGGCACGTGGGCCAAGGTTGGAGGTCGTTGCAGATGCCACT
TTCCTGACTGAGCCGGTGTCCTGCGAGGTCAGCAACGCGGTCGGAAGCGCCAACCGCAGCACCGCGCTGG
AAGTGTTGTATGGACCCATTCTGCAGGCAAAACCTAAGTCCGTGTCCGTGGACGTGGGGAAAGATGCCTC
CTTCAGCTGTGTCTGGCGCGGGAACCCACTTCCACGGATAACCTGGACCCGCATGGGTGGCTCTCAGGTG
CTGAGCTCCGGGCCCACGCTGCGGCTTCCGTCCGTGGCACTGGAGGATGCGGGCGACTATGTATGCAGGG
CTGAGCCGAGGAGAACGGGTCTGGGAGGCGGCAAAGCGCAGGCGAGGCTGACTGTGAACGCACCCCCTGT
AGTGACAGCCCTGCAACCTGCACCAGCCTTTCTGAGGGGTCCTGCTCGCCTCCAGTGTGTGGTGTTTGCC
TCCCCTGCCCCAGACTCGGTGGTTTGGTCTTGGGACGAGGGCTTCTTGGAGGCAGGCTCACTGGGCAGGT
TCCTAGTGGAAGCCTTCCCAGCCCCGGAAGTGGAGGGGGGACAGGGCCCTGGCCTTATTTCTGTGCTACA
CATTTCCGGAACCCAGGAGTCCGACTTTACCACCGGCTTCAACTGCAGTGCCCGCAACCGGCTAGGAGAG
GGACGAGTCCAGATCCACTTGGGCCGTAGAGACTTGCTGCCTACTGTCCGGATTGTGGCTGGTGCAGCAT
CTGCAGCCACCTCTCTCCTTATGGTCATCACTGGAGTGGTCCTCTGCTGCTGGCGCCATGGCTCTCTCTC
TAAGCAAAAGAACTTGGTCCGGATCCCAGGAAGCAGCGAGGGTTCCAGTTCACGTGGCCCTGAGGAGGAG
ACAGGCAGCAGTGAGGACCGGGGTCCCATTGTGCACACCGACCACAGTGATTTGGTTCTTGAGGAAAAAG
AGGCTCTGGAGACAAAGGATCCAACCAACGGTTACTACAGGGTTCGAGGGGTCAGTGTGAGCCTTAGCCT
TGGGGAAGCTCCTGGAGGAGGCCTCTTCTTGCCACCGCCCTCTCCGATCGGTCTCCCAGGGACTCCTACT
TACTATGACTTCAAGCCACATCTGGACTTAGTCCCTCCCTGCAGACTGTACAGAGCGAGGGCAGGTTATC
TTACCACCCCCCATCCCCGTGCCTTCACCAGCTACATGAAACCCACATCCTTTGGACCCCCAGAATTGAG
CTCTGGAACTCCCCCCTTCCCGTATGCTACCTTGTCTCCACCCAGCCACCAGCGTCTCCAGACTCATGTG
TGA

Translation (700 aa):
MLASALLVFLCCFKGHAGSSPHFLQQPEDMVVLLGEEARLPCALGAYRGLVQWTKDGLALGGERDLPGWS
RYWISGNSASGQHDLHIKPVELEDEASYECQASQAGLRSRPAQLHVMVPPEAPQVLGGPSVSLVAGVPGN
LTCRSRGDSRPAPELLWFRDGIRLDGSSFHQTTLKDKATGTVENTLFLTPSSHDDGATLICRARSQALPT
GRDTAVTLSLQYPPMVTLSAEPQTVQEGEKVTFLCQATAQPPVTGYRWAKGGSPVLGARGPRLEVVADAT
FLTEPVSCEVSNAVGSANRSTALEVLYGPILQAKPKSVSVDVGKDASFSCVWRGNPLPRITWTRMGGSQV
LSSGPTLRLPSVALEDAGDYVCRAEPRRTGLGGGKAQARLTVNAPPVVTALQPAPAFLRGPARLQCVVFA
SPAPDSVVWSWDEGFLEAGSLGRFLVEAFPAPEVEGGQGPGLISVLHISGTQESDFTTGFNCSARNRLGE
GRVQIHLGRRDLLPTVRIVAGAASAATSLLMVITGVVLCCWRHGSLSKQKNLVRIPGSSEGSSSRGPEEE
TGSSEDRGPIVHTDHSDLVLEEKEALETKDPTNGYYRVRGVSVSLSLGEAPGGGLFLPPPSPIGLPGTPT
YYDFKPHLDLVPPCRLYRARAGYLTTPHPRAFTSYMKPTSFGPPELSSGTPPFPYATLSPPSHQRLQTHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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