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Report for CCDS39875.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39875.1 Public Mus musculus 7 Zfp14 23 108 98 CCDS HistoryNCBI Gene:243906Re-query CCDS DB by CCDS ID:39875.1Re-query CCDS DB by GeneID:243906See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39875.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077787.7 ENSMUSP00000076960.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077787.7Link to Ensembl Protein Viewer:ENSMUSP00000076960.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000077787Re-query CCDS DB by Protein ID:ENSMUSP00000076960
Original member Current member EBI ENSMUST00000207873.1 ENSMUSP00000146824.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207873.1Link to Ensembl Protein Viewer:ENSMUSP00000146824.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207873Re-query CCDS DB by Protein ID:ENSMUSP00000146824
Original member Current member EBI ENSMUST00000207072.1 ENSMUSP00000146913.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207072.1Link to Ensembl Protein Viewer:ENSMUSP00000146913.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207072Re-query CCDS DB by Protein ID:ENSMUSP00000146913
Original member Current member NCBI NM_001358860.1 NP_001345789.1 Accepted alive Link to Nucleotide Sequence:NM_001358860.1Link to Protein Sequence:NP_001345789.1Re-query CCDS DB by Nucleotide ID:NM_001358860Re-query CCDS DB by Protein ID:NP_001345789Link to BLAST:NP_001345789.1
Original member Current member NCBI NM_011748.2 NP_035878.1 Accepted alive Link to Nucleotide Sequence:NM_011748.2Link to Protein Sequence:NP_035878.1Re-query CCDS DB by Nucleotide ID:NM_011748Re-query CCDS DB by Protein ID:NP_035878Link to BLAST:NP_035878.1
Original member Current member NCBI NM_178733.5 NP_848848.1 Accepted alive Link to Nucleotide Sequence:NM_178733.5Link to Protein Sequence:NP_848848.1Re-query CCDS DB by Nucleotide ID:NM_178733Re-query CCDS DB by Protein ID:NP_848848Link to BLAST:NP_848848.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345789.1 501 P10755 501 100% 0 0
NP_035878.1 501 P10755 501 100% 0 0
NP_848848.1 501 P10755 501 100% 0 0

Chromosomal Locations for CCDS 39875.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30038053 30039416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30043530 30043656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30044720 30044734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGCCCTGGCTCAGGGTTTAGTGACGTTTGGGGATGTGGCTGTGGATTTCTCTCAGGAGGAGTGGGAAT
TCCTGGACCCTGCTCAGAAGAACCTGTACAGGGATGTGATGTGGGAGACCTATAGCAATTTTATTTCACT
GGATTTGGAGTCTAGATTCAAGACCGATACTTCATCTTCAGACAAGGGCATTTGTGAAGTATATTCGTTA
CAGTGGGAGTTGATTGAGAAAATTAAAAACCTAAGCCCTCAGGGTTCTGGTCTTAGTGATGATCAGGAAT
GTAAACACAAGACTGGGCTACAAAAGGAACCGCAGGAGGGTTATTTTGGGCAGTTGAAAATTACCTCTGA
AAAAGTCACATATGAAAAGCACAGTTTCCTTTCTGAGTACCAGAGAGTTCAGAATGGAGAAAAGTTCTAT
GAATGTAAAGAGTGTAGGAAGACCTTTATCCGCCGCTCAACGCTTAGTCAGCACTTGAGGATCCACACCG
GCGAGAAACCTTACAAATGCAAGGAGTGTGGGCAACCCTTCAGACAGCGGGCGCACCTTATCCGACATCA
CAAACTTCACACCGGTGAGAAGCCCTATGAGTGTAAGGACTGTGGGAAGGCCTTTACAGTGCTCCAGGAA
CTCACACAGCACCAGCGTCTTCACACTGGTGAGAAGCCGTACGAATGCAAGGAATGTGGAAAGGCCTTCC
GGGTCCATCAGCAGCTGGCTCGGCATCAGAGGATTCACACTGGGGAAAAGCCCTATGAGTGCAAGGAGTG
TGGGAAGACCTTCAGACAGTGCACACACCTTACCCGACACCAGAGACTTCACACTTCTGAGAAACTCTAT
GAATGTAAGGAGTGTGGGAAAGCCTTCGTGTGTGGCCCAGACCTTCGAGTACATCAGAAAATCCACTTTG
GTGAGAAGCCCTATGCCTGTAAGGACTGTGGTAAGTCCTTCAGAATATGCCAACAGCTGACCGTCCACCA
GAGTATTCACACTGGGGAGAAACCCTATGAATGTAAGGAATGTGGGAAGACCTTCAGATTGAGGCAGCAG
CTTGTTCGCCATCAGAGAATCCATACCCACGAGAGACCCTATGAGTGTCTGGAATGCTGGAAGACCTTCA
GTAGCTACTCCCAGCTGATTTCACATCAGAGCATTCATGTTGGGGAGAGACCGTACGAGTGTGAAGAGTG
TGGGAAGGCCTTCCGGCTGCTCTCGCAGCTCACTCAGCACCAGAGCATCCATACAGGCGAGAAGCCTTAT
GAATGCCAGGAGTGTAGAAAACCCTTCCGGCTGTTGTCACAGCTCACTCAGCACCGGAGCATCCACACCG
GCGAGAAGCCTTATGAATGCAAGGACTGTGGCAAGGCTTTTAGACTTTATTCATTTCTTTCTCAGCACCA
GAGGATCCACACTGGTGAGAAGCCCTACAAATGTAAGGAGTGTAAGAAGGCCTTCAGACAGCACTCACAC
CTGACCCAGCACCAGAAGATCCACAGTGGAACCTGA

Translation (501 aa):
MALAQGLVTFGDVAVDFSQEEWEFLDPAQKNLYRDVMWETYSNFISLDLESRFKTDTSSSDKGICEVYSL
QWELIEKIKNLSPQGSGLSDDQECKHKTGLQKEPQEGYFGQLKITSEKVTYEKHSFLSEYQRVQNGEKFY
ECKECRKTFIRRSTLSQHLRIHTGEKPYKCKECGQPFRQRAHLIRHHKLHTGEKPYECKDCGKAFTVLQE
LTQHQRLHTGEKPYECKECGKAFRVHQQLARHQRIHTGEKPYECKECGKTFRQCTHLTRHQRLHTSEKLY
ECKECGKAFVCGPDLRVHQKIHFGEKPYACKDCGKSFRICQQLTVHQSIHTGEKPYECKECGKTFRLRQQ
LVRHQRIHTHERPYECLECWKTFSSYSQLISHQSIHVGERPYECEECGKAFRLLSQLTQHQSIHTGEKPY
ECQECRKPFRLLSQLTQHRSIHTGEKPYECKDCGKAFRLYSFLSQHQRIHTGEKPYKCKECKKAFRQHSH
LTQHQKIHSGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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