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Report for CCDS39771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39771.1 Public Mus musculus 7 Pla2g4c 23 108 98 CCDS HistoryNCBI Gene:232889Re-query CCDS DB by CCDS ID:39771.1Re-query CCDS DB by GeneID:232889See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39771.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043612.9 ENSMUSP00000043672.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043612.9Link to Ensembl Protein Viewer:ENSMUSP00000043672.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000043612Re-query CCDS DB by Protein ID:ENSMUSP00000043672
Original member Current member NCBI NM_001004762.3 NP_001004762.1 Accepted alive Link to Nucleotide Sequence:NM_001004762.3Link to Protein Sequence:NP_001004762.1Re-query CCDS DB by Nucleotide ID:NM_001004762Re-query CCDS DB by Protein ID:NP_001004762Link to BLAST:NP_001004762.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004762.1 597 Q64GA5-1 597 100% 0 0

Chromosomal Locations for CCDS 39771.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 13329409 13329416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13329648 13329762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13329971 13330107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13335193 13335382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13337737 13337857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13339601 13339741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13340613 13340666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13342391 13342432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13343373 13343516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13343891 13344040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13344437 13344532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13345997 13346151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13348214 13348385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13356176 13356326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13357026 13357143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGAACTAAGCTCTGGGGTCTGCCCTGCCACTAGACTCCAGGAAGCAGAAAAGGCAGCTGTGCACAAAC
GCAGTCCCAAGGTTTTGGAGGCTCTACGAAAGCTCAACATCCAAGCTGACCAGGCTCCAGTCATTGCTGT
CTTGGGCTCTGGCGGGGGGCTGCGGGCCCACATCGCTTGTCTTGGTGTGCTGAGTGAGCTGAAAGAACTT
GGCCTGTTGGATGCTGTCACATACCTCGCAGGGGTCTCTGGGTCCACTTGGGCACTGTCTTCACTCTACA
CCAAGAATGGAAATATGGAAGGGATAGAAGAGGAGCTGAAACATCGGTATGAGAAGAATGAGTGGGACTT
TCATGAGAGCCTGGAGAAAGCCATCCAGGCATCAAAGAGGGAGAATTACTCCCTGACTGACTTTTGGGCC
TATTTAATTGTTTCCAGGCAAATCAGAGAACTTCAGGATTCGAATTTGTCCAGTCTAAAGAAGCAAGTGG
AAGAAGGAGTGCTGCCCTATCCCATCTTTGCAGCCATTGATGAGGACCTTCTGGCTGATTGGAGGGAGAG
GAAAACTCAGAATTCCTGGTTTGAATTCACTCCTCATCATGCTGGCTACCCTGCACTTGGGGCTTATGTC
CCCATCACAGAGTTTGGAAGCAGATTTGAGAATGGGAAACTGGTTAAATCTGAGCCTGAGAGAGATTTGA
CTTTCCTGAGAGGTTTATGGGGAAGTGCTTTTGCTGATATTAAAGAAATTAAGAATTATATTTTGAACTA
CTTCAGGAACCCCTTTGGAAAATTGAAGTTTATAGAAGGACCAGTGACATACTCAGAAGCACCAAGGATG
AATGTGGATGCAATGCTCTTGGATTTAGTGATGGCTTATTTCACAGATATGAATGACCCCAGCATCAAGG
ATAAGCTCTGTGCCCTTCAGCAGGCTCTGGGTACTGAGACAGATGAATTTGGCATAGAGATGGCTGAGAT
CATCCAGAATTGGAATGAGACCTCCGCAGAGAAGAAGGAGCAGTTTCTCGACCATCTGTTGGATCGCTTC
AAGAAGACACAAGAAGACACCACCACATACAGTTTGATGAACTGGAACACGGGTCTAGTTTGGGACCGTT
GCGTTTTTGTGAATGAAACTCGCAAGTGTGTCTCCAAATGGCAGTGGGGAACTGTTTACAACTTCCTCTA
TAAACACGGTAAAATTGCAGATGAGACCATGTGCAGCCGAGAGCTTCTCCATCTGGTGGATGCTGGTTTT
GCCATCAACACTCCCTATCCACTTGTTCTGCCTCCTGTGCGTGAAACTCACCTCATCCTCTCATTTGACT
TCAGTGCTGGGGACCCACTAGAGACCATCAGGGCCACAGCAGACTACTGCCAACGCCATGAAATCCCCTT
TCCTGAGGTGAGCGAGGATCAGCTGAAGGAATGGGCCAAAGCCCCAGCAAGCTGCTATGTCCTCAGAGGG
GAAACAGGACCTGTTGTCATGCACTTTACTCTGTTCAACAAAGACAACTGTGGAGATGATATTGAGACAT
GGAGAAAAAAATATGGGACAGTAAAACTATCTGACTCATACACACCAGACCTGGTGAGAGATTTGCTGAG
GGTATCCAAGGAGAATGTGAAGAAAAACAAAATTAATATCCTCAGTGAGATGAGGAAAGTGGCTGGGAAT
CCTGGGAACATCCCAAGAGTGAACAAGGAGGCCTGCTTGGGAGACAGAGTGAAGGATCCCCAAGGCTCTC
AGACTGTGGAGTTTAAGAAATCCCACAACATATCTAAGGATTAA

Translation (597 aa):
MELSSGVCPATRLQEAEKAAVHKRSPKVLEALRKLNIQADQAPVIAVLGSGGGLRAHIACLGVLSELKEL
GLLDAVTYLAGVSGSTWALSSLYTKNGNMEGIEEELKHRYEKNEWDFHESLEKAIQASKRENYSLTDFWA
YLIVSRQIRELQDSNLSSLKKQVEEGVLPYPIFAAIDEDLLADWRERKTQNSWFEFTPHHAGYPALGAYV
PITEFGSRFENGKLVKSEPERDLTFLRGLWGSAFADIKEIKNYILNYFRNPFGKLKFIEGPVTYSEAPRM
NVDAMLLDLVMAYFTDMNDPSIKDKLCALQQALGTETDEFGIEMAEIIQNWNETSAEKKEQFLDHLLDRF
KKTQEDTTTYSLMNWNTGLVWDRCVFVNETRKCVSKWQWGTVYNFLYKHGKIADETMCSRELLHLVDAGF
AINTPYPLVLPPVRETHLILSFDFSAGDPLETIRATADYCQRHEIPFPEVSEDQLKEWAKAPASCYVLRG
ETGPVVMHFTLFNKDNCGDDIETWRKKYGTVKLSDSYTPDLVRDLLRVSKENVKKNKINILSEMRKVAGN
PGNIPRVNKEACLGDRVKDPQGSQTVEFKKSHNISKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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