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Report for CCDS39645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39645.1 Public Mus musculus 6 Tead4 23 108 98 CCDS HistoryNCBI Gene:21679Re-query CCDS DB by CCDS ID:39645.1Re-query CCDS DB by GeneID:21679See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 39645.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112157.3 ENSMUSP00000107784.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112157.3Link to Ensembl Protein Viewer:ENSMUSP00000107784.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112157Re-query CCDS DB by Protein ID:ENSMUSP00000107784
Original member Current member EBI ENSMUST00000130454.7 ENSMUSP00000118083.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130454.7Link to Ensembl Protein Viewer:ENSMUSP00000118083.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130454Re-query CCDS DB by Protein ID:ENSMUSP00000118083
Original member Current member NCBI NM_001080979.1 NP_001074448.2 Accepted alive Link to Nucleotide Sequence:NM_001080979.1Link to Protein Sequence:NP_001074448.2Re-query CCDS DB by Nucleotide ID:NM_001080979Re-query CCDS DB by Protein ID:NP_001074448Link to BLAST:NP_001074448.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074448.2 384 Q62296-2 384 100% 0 0

Chromosomal Locations for CCDS 39645.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128228366 128228479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128228568 128228720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128230592 128230732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128242401 128242574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128243370 128243509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128246321 128246376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128246818 128246861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128251540 128251602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128251922 128251986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128270868 128271072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol I (codon ATT) with M at amino acid position 1

Nucleotide Sequence (1155 nt):
ATTACCTCCAACGAGTGGAGCTCTCCCGACTCCCCCGAGGGGAGCAGCATCTCTGGGGGCAGCCAGGCAC
TGGACAAGCCCATCGACAATGATGCAGAGGGTGTATGGAGCCCCGAAATTGAGCGAAGCTTCCAGGAGGC
CCTGGCCATCTACCCACCCTGCGGCCGCCGCAAAATTATCCTGACGGAGGAAGGCAAGATGTATGGTCGG
AATGAGCTGATCGCACGCCATATCAAGCTCAGGACAGGGAAGACGCGCACAAGGAAGCAGGTCTCCAGCC
ACATCCAGGTGCTTGCCCGTCGAAAAGCCCGGGAGATCCAGGCCAAACTCAAGTTTTGGCAAGGAGCTTT
GCCAGGCCAACCTGGAACATCCCACGATGTGAAACCTTTCTCTCAAAACACCTACCCTGTCCAGCCTCCG
CTGCCTCTGCCAGGCTTTGAGTCTCCTGCAGGGCCCACCCCCTCACCCTCCGCACCGCTCGCTCCTCCGT
GGCAAGGCCGCAGCATAGCTAGCTCCAAGCTCTGGATGTTGGAGTTCTCGGCTTTCCTGGAGCGCCAGCA
AGATCCCGACACATACAACAAACACCTGTTTGTGCACATCAGCCAGTCAAGCCCAAGCTACAGTGACCCC
TACCTCGAAACTGTGGACATCCGCCAAATCTATGACAAGTTCCCAGAGAAGAAGGGAGGCCTCAAGGAGC
TATTTGAACGGGGGCCCTCTAATGCCTTCTTCCTTGTGAAGTTCTGGGCAGACCTCAATACCAACATCGA
TGACGAGGGCAGCGCCTTCTATGGGGTCTCCAGCCAGTACGAGAGCCCGGAGAACATGATTATCACCTGC
TCTACGAAGGTCTGCTCATTTGGCAAGCAAGTGGTGGAGAAAGTTGAGACGGAGTATGCCCGCTATGAGA
ATGGCCACTATTTGTACCGCATCCACCGGTCCCCTCTCTGTGAGTACATGATCAACTTTATCCACAAGCT
GAAACACTTACCCGAGAAGTACATGATGAACAGTGTGCTGGAGAACTTCACCATCCTGCAGGTGGTCACC
AACCGAGACACACAGGAGACCTTGCTGTGTATTGCATATGTCTTCGAAGTTTCAGCCAGCGAGCATGGGG
CTCAGCACCACATCTACCGACTTGTGAAAGAATGA

Translation (384 aa):
MTSNEWSSPDSPEGSSISGGSQALDKPIDNDAEGVWSPEIERSFQEALAIYPPCGRRKIILTEEGKMYGR
NELIARHIKLRTGKTRTRKQVSSHIQVLARRKAREIQAKLKFWQGALPGQPGTSHDVKPFSQNTYPVQPP
LPLPGFESPAGPTPSPSAPLAPPWQGRSIASSKLWMLEFSAFLERQQDPDTYNKHLFVHISQSSPSYSDP
YLETVDIRQIYDKFPEKKGGLKELFERGPSNAFFLVKFWADLNTNIDDEGSAFYGVSSQYESPENMIITC
STKVCSFGKQVVEKVETEYARYENGHYLYRIHRSPLCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVT
NRDTQETLLCIAYVFEVSASEHGAQHHIYRLVKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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