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Report for CCDS39634.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39634.1 Public Mus musculus 6 Iffo1 23 108 98 CCDS HistoryNCBI Gene:320678Re-query CCDS DB by CCDS ID:39634.1Re-query CCDS DB by GeneID:320678See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39634.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117675.7 ENSMUSP00000113088.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117675.7Link to Ensembl Protein Viewer:ENSMUSP00000113088.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000117675Re-query CCDS DB by Protein ID:ENSMUSP00000113088
Original member Current member NCBI NM_001039669.3 NP_001034758.1 Accepted alive Link to Nucleotide Sequence:NM_001039669.3Link to Protein Sequence:NP_001034758.1Re-query CCDS DB by Nucleotide ID:NM_001039669Re-query CCDS DB by Protein ID:NP_001034758Link to BLAST:NP_001034758.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034758.1 562 Q8BXL9-1 562 100% 0 0

Chromosomal Locations for CCDS 39634.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125145257 125146029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125149589 125149649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125149741 125149836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125151385 125151525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125151795 125151803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125152614 125152771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125153042 125153162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125153410 125153502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125159062 125159192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125160533 125160638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGAATCCGTTATTTGGTCCCAACCTCTTCCTCCTACAGCAGGAGCAGCAAGGCTTGGCCGGGCCGCTGG
GGGACCCTCTGGGAGGTGACCACTTTGCCGGGGGAGGGGACTTAGCCTCGGCTCCGCTTGCCTCGGCCGG
CCCCTCTGCCTATTCGCCTCCGGGGCCTGGTCCGGCGCCCCCCGCAGCCATGGCTCTCCGCAACGACCTA
GGCTCCAACATCAACGTACTGAAGACCCTGAACCTCCGGTTTCGCTGCTTCCTAGCCAAGGTGCACGAGC
TAGAGCGCCGAAATCGGCTGCTGGAGAAACAGCTGCAGCAGGCTCTAGAGGAGGGTAAGCAGGGCAGGCG
GGGCCTGGCCCGCCGTGACCAGGCGGTACAGACCGGCTTCATCAGCCCGATCCGGCCCCTGGGGCTGCCC
CTGAGCTCCCGGCCGGCCGCCGTGTGCCCCCCATCAGCGCGGGTGCTGGGCTCGCCCTCCCGCTCGCCAG
CTGGACCCTTAGCATCCTCTGCCGCCTGCCACACATCATCCTCCACTTCCACATCCACTGCCTTCTCCTC
GTCGACCCGCTTCATGCCTGGCACCATCTGGTCCTTCTCTCACGCCCGCCGGCTTGGACCAGGACTGGAA
CCCACGCTGGTGCAAGGGCCTGGCCTGTCGTGGGTACACCCTGACGGGGTGGGCGTCCAGATCGACACCA
TCACCCCTGAGATCCGTGCCCTGTACAACGTGCTGGCCAAAGTGAAGCGGGAGCGGGACGAGTACAAGCG
AAGGTGGGAAGAGGAATACACGGTTCGGATACAGCTACAAGAGCGAGTGACTGAGCTCCAGGAGGAGGCC
CAAGAGGCCGATGCCTGCCAAGAGGAGCTAGCCATGAAGGTTGAGCAGCTGAAGGCAGAGCTGGTGGTCT
TCAAGGGGCTCATGAGTAATAATCTGACAGAGCTGGACACCAAGATCCAGGAAAAGGCCATGAAAGTCGA
CATGGACATCTGCCGCCGCATTGACATCACGGCCAAGCTCTGTGACTTGGCCCAGCAGCGCAACTGTGAG
GATATGATCCAGATGTTCCAGAAGAAGCTGGTCCCGTCCATGGGGGGGCGGAAGCGGGAGCGCAAGGCTG
CTGTGGAGGAGGACACCTCCCTGTCGGAGAGTGATGGGCCCCGCCAGCCTGAGGGTGCCGAGGAGGAGAG
CACAGCCCTCAGCATCAACGAGGAGATGCAGCGCATGCTCAGCCAGCTGAGGGAGTATGATTTTGAGGAC
GACTGTGACAGCCTGACTTGGGAGGAGACTGAGGAGACCTTGCTACTTTGGGAGGATTTCTCAGGCTATG
CCATGGCAGCCGCAGAGGCCCAGGGAGAGCAGGAGGACAGCCTGGAGAAGGTGATCAAAGACACGGAGTC
CCTGTTCAAAACCCGGGAGAAGGAGTACCAGGAGACCATTGACCAGATAGAGCTGGAGCTGGCCACAGCC
AAGAACGACATGAACCGACACCTGCATGAGTACATGGAGATGTGCAGCATGAAGCGGGGCCTGGACGTGC
AGATGGAGACCTGCCGCCGGCTCATCACACAGTCCGGGGACCGAAAGTCTCCTGCTTTCACTGCGGTCCC
GCTTAGCGACCCGCCGCCACCGCCGAGTGAGACTGAGGACTCCGATCGAGACGTCTCATCTGATAGCTCC
ATGAGATAG

Translation (562 aa):
MNPLFGPNLFLLQQEQQGLAGPLGDPLGGDHFAGGGDLASAPLASAGPSAYSPPGPGPAPPAAMALRNDL
GSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLARRDQAVQTGFISPIRPLGLP
LSSRPAAVCPPSARVLGSPSRSPAGPLASSAACHTSSSTSTSTAFSSSTRFMPGTIWSFSHARRLGPGLE
PTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQERVTELQEEA
QEADACQEELAMKVEQLKAELVVFKGLMSNNLTELDTKIQEKAMKVDMDICRRIDITAKLCDLAQQRNCE
DMIQMFQKKLVPSMGGRKRERKAAVEEDTSLSESDGPRQPEGAEEESTALSINEEMQRMLSQLREYDFED
DCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATA
KNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSETEDSDRDVSSDSS
MR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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