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Report for CCDS39601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39601.1 Public Mus musculus 6 Tmem40 23 108 98 CCDS HistoryNCBI Gene:94346Re-query CCDS DB by CCDS ID:39601.1Re-query CCDS DB by GeneID:94346See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 39601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072933.12 ENSMUSP00000072704.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072933.12Link to Ensembl Protein Viewer:ENSMUSP00000072704.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072933Re-query CCDS DB by Protein ID:ENSMUSP00000072704
Original member Current member EBI ENSMUST00000166254.6 ENSMUSP00000131697.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166254.6Link to Ensembl Protein Viewer:ENSMUSP00000131697.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166254Re-query CCDS DB by Protein ID:ENSMUSP00000131697
Original member Current member NCBI NM_001168256.1 NP_001161728.1 Accepted alive Link to Nucleotide Sequence:NM_001168256.1Link to Protein Sequence:NP_001161728.1Re-query CCDS DB by Nucleotide ID:NM_001168256Re-query CCDS DB by Protein ID:NP_001161728Link to BLAST:NP_001161728.1
Original member Current member NCBI NM_144805.2 NP_659054.2 Accepted alive Link to Nucleotide Sequence:NM_144805.2Link to Protein Sequence:NP_659054.2Re-query CCDS DB by Nucleotide ID:NM_144805Re-query CCDS DB by Protein ID:NP_659054Link to BLAST:NP_659054.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161728.1 225 Q4FJU9 225 100% 0 0
NP_659054.2 225 Q4FJU9 225 100% 0 0

Chromosomal Locations for CCDS 39601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 115729665 115729684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115730436 115730498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115731007 115731081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115731185 115731256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115733654 115733701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115733995 115734027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115734810 115734845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115736383 115736436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115738948 115739022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115741541 115741672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115742310 115742379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGAGGCTTCAGGATCTTCTTCCCAGTCTCAAGACAGTGGTGGAGTCCACAGGGAAACGGAAGATCACT
ACCAAGAGACAGAGCTCCACAAGCATCATGGGAAGGCCCGGGAGCGATATAAGAGAGACAAGTCTTCCTC
TTCATCCTCATCCTCGTCATCTTCTTCCTCCTCTTCCTCCTCATCTTCTTCCTCCTCCTCAGACAGCAGC
GATGAGGACCAGCCCTCCAGAGGTCCCAGGAAACACAGAAGGAGGCCCCGCAGGGACAGCTTGCGTGGTG
CCGACCATGGGGAACTGGAAGTGCTAAAGGACGAGCTTCAGCTCTGCGGAGGTGCTGCTGGGGAAATGGT
GCCTACTGGGGAGTCAGGACTCCGAAGGAGAGGTTCCGGCTCAGCGGAGGGAGAAGTGGAGGCCTCTCAG
TTAAGAAGACTGAACATAAAGAAGGATGATGAGTTTTTCCATTTTGTCCTTCTCTGCTTTGCCATCGGAG
CCTTGCTGGTGTGTTACCACTACTATGCAGACTGGTTCATGTCCCTCGGGGTCGGCCTGCTCACCTTTGC
TTCTCTCGAGACCATTGGCATCTATTTCGGGCTCGTGTACCGGATCCACAGCGTGCTTCAGGGCTTCATC
CCCCTCCTTCAGAAGTTCCGGCTGCCAGGGTTCAGGAGAACTAACTGA

Translation (225 aa):
MEASGSSSQSQDSGGVHRETEDHYQETELHKHHGKARERYKRDKSSSSSSSSSSSSSSSSSSSSSSSDSS
DEDQPSRGPRKHRRRPRRDSLRGADHGELEVLKDELQLCGGAAGEMVPTGESGLRRRGSGSAEGEVEASQ
LRRLNIKKDDEFFHFVLLCFAIGALLVCYHYYADWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFI
PLLQKFRLPGFRRTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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