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Report for CCDS39577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39577.1 Public Mus musculus 6 Frmd4b 23 108 98 CCDS HistoryNCBI Gene:232288Re-query CCDS DB by CCDS ID:39577.1Re-query CCDS DB by GeneID:232288See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39577.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113355.8 ENSMUSP00000108982.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113355.8Link to Ensembl Protein Viewer:ENSMUSP00000108982.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113355Re-query CCDS DB by Protein ID:ENSMUSP00000108982
Original member Current member NCBI NM_145148.2 NP_660130.2 Accepted alive Link to Nucleotide Sequence:NM_145148.2Link to Protein Sequence:NP_660130.2Re-query CCDS DB by Nucleotide ID:NM_145148Re-query CCDS DB by Protein ID:NP_660130Link to BLAST:NP_660130.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660130.2 981 Q920B0-2 981 100% 0 0

Chromosomal Locations for CCDS 39577.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 97288360 97288480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97292363 97292495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97295576 97296387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97298035 97298154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97300209 97300356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97302289 97302345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97305147 97305375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97306479 97306598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97306679 97306812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97308027 97308168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97308614 97308752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97310663 97310739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97323655 97323741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97325433 97325490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97328233 97328298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97329481 97329564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97353182 97353204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97354005 97354061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97396193 97396277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97412488 97412580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97421562 97421656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97423459 97423524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2946 nt):
ATGACAGAAGGCAGGCACTGCCAGGTTCACCTGCTGGATGACAGAAGACTGGAGCTGCTGGTTCAGCCCA
AGCTTTTATCAAGAGAGCTGCTGGACCTCGTGGCGTCGCATTTCAACCTGAAAGAGAAGGAGTACTTTGG
AATAACGTTTATAGACGACACGGGTCAAGAGAACTGGTTGCAGCTGGACCACAGAGTTCTGGAACATGAT
TTACCTAAGAAGCCCGGCCCAACTCTTCTGCACTTCGCTGTCAGGTTCTACATCGAGAGCATATCCTTCC
TAAAGGATAAGAACACCGTGGAGCTGTTTTTCCTGAACGCAAAGGCCTGTGTACACAAGGGGCAAATTGA
AGTAGACAGTGAGACCATCTTCAAGTTGGCAGCCCTGGTTTTGCAGGAAAGCAAGGGAGATTATACCAGC
GATGAGAATGCCAGGAAAGACTTGAAGACACTGCCAGTCTTTCCAACCAAAACCCTTCAGGAACATCCAT
CCCTCGCTTACTGTGAGGACAGAGTGATTGAGCATTATTTGAAAATCAAAGGTCTCACTCGGGGTCAAGC
TGTGGTCCAGTATATGAAAATAGTAGAAGCCCTACCAACGTATGGAGTCCATTACTATGCAGTGAAGGAT
AAGCAGGGACTTCCATGGTGGCTTGGTATCAGCTACAAAGGAATCGGCCAGTATGACTTACAAGACAAGG
TGAAGCCTCGCAAACTATTTCAATGGAAGCAGCTGGAAAATTTGTATTTCCGTGAGAAGAAATTTGCTGT
GGAGGTGCACGATCCCCGAAGGATTTCAGTGTCTAGAAGAACCTTTGGACAGAGTGGCCTGTTTGTACAA
ACCTGGTATGCAAACTCTTCTCTCATCAAGTCCATCTGGGTAATGGCCATTAGCCAGCATCAGTTCTACC
TGGACCGGAAGCAGAGCAAAGCAAAAATTCCTTCAGCCAGAAGCTTAGACGACATCGCCATGGACTTAAC
AGAGACTGGAACACAGAGGGGCTCCAAACTGGTGACTCTGGAAGCAAAGAGTCAGTTCATCATGGCAAGC
AATGGCAGCCTGATATCCTCAGGTTCTCAGGACTCGGAAGGCATGGAGGAGCAAAAGCGGGAGAAGATTC
TGGAACTCAAGAAGAAGGAGAAGCTGTTGCAAGAAAAGCTCCTGCAGAAAGTGGAGGAGCTGAAGAAGAT
CTGCCTGCGGGAGGCCGAGCTCACGGGCAGAATGCCAAAGGAGTATCCACTGAACATAGGCGAGAAGCCC
CCTCAGGTCAGGAGGCGAGTGGGGACCACGTTCAAGTTAGATGACAACTTACTGCCTACTGAGGAGGATC
CGGCTTTACAAGAACTGGAGAGCAATTTCCTGATACAGCAGAAGCTGGTTGAGGCTGCAAAGAAGCTCGC
CAGTGAGCCCGACCTTTGTAAAACCGTGAAGAAAAAGCGAAAGCAAGATTACACAGACGCTGTGAAAAGA
CTGCAGGAGATTGAAAATTCCATCAACGAATACCGAATCCGATGTGGCAAGAAGCCCAGCCAGAAGGCTG
CCGTTGTCCCACCAGAAGACATCATTCCATCGGAAAGCAGTTCTTTGTCCGACACCACCACCTATGACGA
CCCCAATGACTCCTTCACTCTTGCTGGGCAGCGACCAAGTTCAGTACCTCATTCTCCAAGAATTCTACCC
CCCAAGTCTCTCGGAATTGAGCGAATCCACTTCAGAAAATCCTCCATCAACGAACAGTTCATGGACACCA
GGCATTCCAGAGAAATGCTGTCCACACACAGCAGCCCTTACAAGACTCTGGAGAGGCGGCCACAGGGAGG
ACGGAGCATGCCCACTACGCCCGTCCTGACTCGGAATGCCTACAGCAGCAGCCACCTGGAACCTGACTCC
TCATCTCAACACTGCCGCCAGCGGAGCGGAAGCCTGGAGTCCCAGTCCCACCTGCTCTCCGAGATGGACA
GTGACAAGCCATTTTTCACCCTCTCCAAATCCCAAAGAAGCAGCAGCACGGAGATCCTTGACGACGGGTC
TTCGTATACCAGCCAGTCAAGCTCCGAGTATTACTGTGTGACGCCTGCTGCCAGCCCTTACTACACCACC
CAGACCCTAGACACCCGTGCCAGGGGGAGAAGAAGGTCCAAGAAACACAGTGTTTCTACTTCCAATTCAG
GAAGCATGCCCAACCTAGCACAAAAGGATCCTTTGAGGAACGGTGTCTACTCCAAAGGTCAGGACCCACC
TCCTTCCGGTTACTATATCGCTGGATATCCACCGTATGCAGAGTGTGACCTGTATTACAGTGGTGGCTAC
GTCTACGAGAATGACACTGAGGGACAGTACAGTGTCAATCCTTCTTACCGATCCTCAGCTCACTATGGAT
ATGACCGCCAGAGGGACTACAGCAGGTCTTTCCATGAAGATGAAGTAGACCGCGTGCCACATAACCCATA
CGCAACTCTCCGGCTGCCAAGGAAGGCGGCCGTGAAATCTGAGCACATCACCAAAAACATCCACAAGGCC
TTAGTTGCTGAGCACCTGCGTGGCTGGTACCAGAGGGCTTCTGGACAAAAGGATCAGGGGCACAGCCCAC
AGACGAGCTTTGACTCAGACAGGGGATCGCAGAGGTGCCTGGGATTTGCAGGGCTGCAGGTCCCCTGTTC
TCCAAGCAGTCGAGCATCTTCCTACTCTTCAGTGTCTTCCACAAATGCTTCTGGGAACTGGAGGACCCAG
TTAACCATTGGGCTATCTGAATATGAAAATCCAGTGCATTCTCCCTACACCAGCTACTATGGCAGCATCT
ACAATCCCTTGTCCTCTCCGAGCAGACAGTATGCAGAGACCACTCCACTGGACGGTACAGACGGAAGCCA
GCTGGAAGACAACCTGGAGGGTAGTGAACAGAGGCTTTTTTGGCACGAAGACTCCAAGCCTGGAACATTA
GTCTGA

Translation (981 aa):
MTEGRHCQVHLLDDRRLELLVQPKLLSRELLDLVASHFNLKEKEYFGITFIDDTGQENWLQLDHRVLEHD
LPKKPGPTLLHFAVRFYIESISFLKDKNTVELFFLNAKACVHKGQIEVDSETIFKLAALVLQESKGDYTS
DENARKDLKTLPVFPTKTLQEHPSLAYCEDRVIEHYLKIKGLTRGQAVVQYMKIVEALPTYGVHYYAVKD
KQGLPWWLGISYKGIGQYDLQDKVKPRKLFQWKQLENLYFREKKFAVEVHDPRRISVSRRTFGQSGLFVQ
TWYANSSLIKSIWVMAISQHQFYLDRKQSKAKIPSARSLDDIAMDLTETGTQRGSKLVTLEAKSQFIMAS
NGSLISSGSQDSEGMEEQKREKILELKKKEKLLQEKLLQKVEELKKICLREAELTGRMPKEYPLNIGEKP
PQVRRRVGTTFKLDDNLLPTEEDPALQELESNFLIQQKLVEAAKKLASEPDLCKTVKKKRKQDYTDAVKR
LQEIENSINEYRIRCGKKPSQKAAVVPPEDIIPSESSSLSDTTTYDDPNDSFTLAGQRPSSVPHSPRILP
PKSLGIERIHFRKSSINEQFMDTRHSREMLSTHSSPYKTLERRPQGGRSMPTTPVLTRNAYSSSHLEPDS
SSQHCRQRSGSLESQSHLLSEMDSDKPFFTLSKSQRSSSTEILDDGSSYTSQSSSEYYCVTPAASPYYTT
QTLDTRARGRRRSKKHSVSTSNSGSMPNLAQKDPLRNGVYSKGQDPPPSGYYIAGYPPYAECDLYYSGGY
VYENDTEGQYSVNPSYRSSAHYGYDRQRDYSRSFHEDEVDRVPHNPYATLRLPRKAAVKSEHITKNIHKA
LVAEHLRGWYQRASGQKDQGHSPQTSFDSDRGSQRCLGFAGLQVPCSPSSRASSYSSVSSTNASGNWRTQ
LTIGLSEYENPVHSPYTSYYGSIYNPLSSPSRQYAETTPLDGTDGSQLEDNLEGSEQRLFWHEDSKPGTL
V


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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