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Report for CCDS39540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39540.1 Public Mus musculus 6 Nat8f4 23 108 98 CCDS HistoryNCBI Gene:75541Re-query CCDS DB by CCDS ID:39540.1Re-query CCDS DB by GeneID:75541See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095757.3 ENSMUSP00000093430.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095757.3Link to Ensembl Protein Viewer:ENSMUSP00000093430.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095757Re-query CCDS DB by Protein ID:ENSMUSP00000093430
Original member Current member NCBI NM_029331.3 NP_083607.3 Accepted alive Link to Nucleotide Sequence:NM_029331.3Link to Protein Sequence:NP_083607.3Re-query CCDS DB by Nucleotide ID:NM_029331Re-query CCDS DB by Protein ID:NP_083607Link to BLAST:NP_083607.3

Chromosomal Locations for CCDS 39540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85900859 85901539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGGCTTTTTATCACATCCGACAGTACCAGGAGAAGGACCACAAAAAGGTCCTGGAATTGTTCTCCAGGG
GCATGAAGGAACATGTCCCTGCTGCCTTCCACCATATGCTGACACTACCTCAGACTCTCCTGCTTTTACC
TGGGGTGCCTGTGACCATAGTCCTAGTGTCTGGCTCCTGGCTCCTGGCCACAGTATGCAGCTTTCTCTTT
CTCCTTTGCCTGCGGCTCCTTATCTGGCTTTCTTGGAGAAATTACGTGGCTACAAGTTTGCAAGCTGACC
TGGCTGACATCACCAAGTCTTACCTGAATGCACATGGCTCCTTCTGGGTGGCTGAGTCTGGAGACCAGGT
AGTTGGCATAGTGGGTGCTCGGCCAGTCAAGGACCCTCCATTAGGGAAGAAGCAGATGCAGCTCTTTCGC
CTGTCTGTGTCCTCACAGCATCGAGGACAGGGGATAGCAAAAGCACTAGTCAGAACTGTCCTCTGGTTTG
CTCGGGACCAGGACTACAGTGATGTTGTCCTTGAGACCAGTTGTGTGCAGTACAGTGCTGTGGCTCTCTA
CCAGGCCATGGGCTTCCGGAAAACAGACCAGTACTTTGTGAGCATAGCCACAAGGTTAATGGGTCTTTCT
ATCCTTCATTTCACCTACTCTCTCCCTTTTGCTTGGGGATCAGGGATGTGA

Translation (226 aa):
MAFYHIRQYQEKDHKKVLELFSRGMKEHVPAAFHHMLTLPQTLLLLPGVPVTIVLVSGSWLLATVCSFLF
LLCLRLLIWLSWRNYVATSLQADLADITKSYLNAHGSFWVAESGDQVVGIVGARPVKDPPLGKKQMQLFR
LSVSSQHRGQGIAKALVRTVLWFARDQDYSDVVLETSCVQYSAVALYQAMGFRKTDQYFVSIATRLMGLS
ILHFTYSLPFAWGSGM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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