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Report for CCDS3954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3954.1 Public Homo sapiens 5 PARP8 24 110 108 CCDS HistoryNCBI Gene:79668Re-query CCDS DB by CCDS ID:3954.1Re-query CCDS DB by GeneID:79668See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3954.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281631.10 ENSP00000281631.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281631.10Link to Ensembl Protein Viewer:ENSP00000281631.4Re-query CCDS DB by Nucleotide ID:ENST00000281631Re-query CCDS DB by Protein ID:ENSP00000281631
Original member Current member EBI ENST00000505697.6 ENSP00000422217.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505697.6Link to Ensembl Protein Viewer:ENSP00000422217.2Re-query CCDS DB by Nucleotide ID:ENST00000505697Re-query CCDS DB by Protein ID:ENSP00000422217
Original member Current member NCBI NM_001178055.2 NP_001171526.1 Accepted alive Link to Nucleotide Sequence:NM_001178055.2Link to Protein Sequence:NP_001171526.1Re-query CCDS DB by Nucleotide ID:NM_001178055Re-query CCDS DB by Protein ID:NP_001171526Link to BLAST:NP_001171526.1
Original member Current member NCBI NM_024615.4 NP_078891.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024615.4Link to Protein Sequence:NP_078891.2Re-query CCDS DB by Nucleotide ID:NM_024615Re-query CCDS DB by Protein ID:NP_078891Link to BLAST:NP_078891.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171526.1 854 Q8N3A8-1 854 100% 0 0
NP_078891.2 854 Q8N3A8-1 854 100% 0 0

Chromosomal Locations for CCDS 3954.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 50667096 50667186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50668071 50668125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50750151 50750188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50759643 50759732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50760292 50760362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50761821 50761898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50763148 50763242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50778069 50778129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50778560 50778650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50788523 50788589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50794207 50794332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50794853 50795417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50796982 50797032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50797138 50797233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50815432 50815524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50821213 50821338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50822335 50822400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50824908 50824975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50826755 50826803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50827944 50828056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50828312 50828384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50829892 50829961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50832781 50832854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50833979 50834048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50834931 50835015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 50841966 50842068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2565 nt):
ATGGGGATGTGTTCAAGGCAAGAGCGAATTCAGAAGGATATCGACGTCGTGATCCAGAAGTCCAGAGCTG
AGAAGGACTGCCTGTTTGCAGATTTCAGATACTCTGACTCCACCTTTACTTTTACCTACGTTGGCGGCCC
CAGAAGTGTATCCTACTCAGTACATGTATCTGAAGATTACCCAGATAATACATATGTGTCAAGTTCAGAG
AATGATGAAGATGTGCTAGTTACTACAGAGCCAATACCAGTAATTTTTCATAGAATAGCAACAGAATTAA
GAAAAACAAATGACATTAACTGTTGCTTATCCATAAAATCCAAATTACAAAAGGAAAATGGGGAGGAATC
AAGACAGAATAGTACAGTGGAGGAAGATTCTGAAGGTGACAATGATTCCGAAGAATTTTATTACGGAGGG
CAGGTGAACTATGATGGGGAACTGCACAAGCACCCACAACTGGAAGCTGATTTGTCAGCAGTTAGAGAGA
TATATGGGCCACATGCAGTTTCTCTCAGGGAATATGGAGCCATTGATGATGTAGATATTGATCTGCATAT
CGATGTTAGCTTTCTTGATGAGGAGATTGCTGTGGCTTGGGAAGTAATTCGAACAGAACCTATAATTGTT
CGACTACACTGTTCACTTACACAGTATTTAAATGGCCCAGTGCCCACTGTTGATGTCTTTCAGATTTCCA
CAAAAGAGCGATTTGGATTGGGACATCAGCTGAAAAAAATCATGCAGACATTTGTTACACAGCAGTGGAA
ACAGAGCAAAGAAAAATCCAATTGCCTGCACAATAAAAAGTTGTCAGAGAAGAAAGTGAAGTCTCCCCTG
CATTTATTTTCTACTTTGCGCAGGTCGCCAAGTTATCCTCCCCCTGGTTGTGGCAAAAGCAAATCCAAAC
TGAAATCTGAGCAGGACGGAATCTCCAAAACGCATAAGCTGCTGCGGAGGACTTGTTCCAGCACAGTCAA
GACTGATGATGTGTGTGTCACAAAGTCACACAGGACCTTTGGCCGCTCCTTGTCCAGCGATCCCAGGGCG
GAGCAGGCTATGACAGCAATTAAATCGCACAAACTTTTGAACCGTCCTTGCCCTGCAGCTGTTAAGTCAG
AGGAATGCCTAACTCTAAAGTCGCATAGACTATTGACTCGATCTTGTTCTGGAGATCCACGATGTGAGCA
CAACACAAACTTGAAGCCCCATAAACTGTTAAGCAGGTCTTACTCTAGTAATCTCAGAATGGAAGAATTA
TATGGACTGAAAAATCACAAATTGCTCAGCAAGTCCTACTCCAGTGCCCCCAAGTCATCCAAAACTGAGC
TTTTCAAGGAACCTAACGCAGAGGGCAGGAGGCTCTCTCTTACCTCAGGGCTTATTGGTATCCTAACACC
ATCTTCATCTTCATCTTCTCAGCTTGCTCCAAATGGTGCAAAATGCATTCCAGTACGAGACCGTGGCTTC
CTGGTGCAGACAATTGAGTTTGCTGAACAGCGGATCCCTGTATTAAATGAATATTGTGTGGTTTGTGATG
AGCCACATGTGTTTCAAAATGGCCCTATGCTTAGGCCTACCGTATGTGAACGGGAGCTGTGTGTGTTTGC
TTTTCAAACCCTGGGAGTAATGAATGAAGCTGCTGATGAAATAGCAACTGGAGCTCAGGTGGTAGATCTA
CTAGTATCCATGTGTAGGTCTGCGTTGGAATCTCCTAGAAAAGTTGTGATTTTCGAGCCATATCCTTCTG
TGGTAGATCCTAATGATCCTCAGATGTTGGCCTTCAACCCCAGGAAAAAGAACTATGATCGAGTAATGAA
AGCACTGGATAGCATAACTTCTATCAGAGAAATGACACAAGCACCATATCTGGAAATCAAGAAGCAAATG
GATAAACAGGACCCCCTTGCTCATCCCTTACTGCAATGGGTTATATCAAGTAATAGATCACATATTGTGA
AACTGCCAGTTAACAGGCAATTGAAGTTTATGCATACTCCACATCAGTTCCTTCTTCTCAGCAGTCCACC
AGCCAAAGAATCCAATTTTAGAGCTGCTAAAAAACTCTTTGGAAGCACCTTTGCATTTCATGGCTCACAC
ATTGAAAACTGGCACTCCATCCTGAGGAATGGTCTGGTTGTTGCTTCTAATACACGATTGCAGCTCCATG
GTGCAATGTATGGAAGTGGAATCTATCTTAGTCCAATGTCAAGCATATCATTTGGTTACTCAGGGATGAA
CAAGAAACAGAAGGTGTCAGCCAAGGACGAGCCAGCTTCAAGCAGTAAAAGCAGCAATACATCACAGTCA
CAGAAAAAAGGACAGCAATCCCAATTCCTGCAAAGCCGTAACTTAAAATGCATAGCCTTATGTGAAGTGA
TCACCTCATCTGACCTGCACAAACATGGAGAGATATGGGTTGTCCCCAATACTGACCATGTCTGCACACG
ATTCTTTTTCGTCTATGAAGACGGCCAAGTGGGAGATGCAAATATTAATACACAAGAAGGAGGCATTCAC
AAAGAGATCCTCCGAGTAATTGGTAATCAAACTGCTACTGGTTAA

Translation (854 aa):
MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYVGGPRSVSYSVHVSEDYPDNTYVSSSE
NDEDVLVTTEPIPVIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNSTVEEDSEGDNDSEEFYYGG
QVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDDVDIDLHIDVSFLDEEIAVAWEVIRTEPIIV
RLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQWKQSKEKSNCLHNKKLSEKKVKSPL
HLFSTLRRSPSYPPPGCGKSKSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCVTKSHRTFGRSLSSDPRA
EQAMTAIKSHKLLNRPCPAAVKSEECLTLKSHRLLTRSCSGDPRCEHNTNLKPHKLLSRSYSSNLRMEEL
YGLKNHKLLSKSYSSAPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQLAPNGAKCIPVRDRGF
LVQTIEFAEQRIPVLNEYCVVCDEPHVFQNGPMLRPTVCERELCVFAFQTLGVMNEAADEIATGAQVVDL
LVSMCRSALESPRKVVIFEPYPSVVDPNDPQMLAFNPRKKNYDRVMKALDSITSIREMTQAPYLEIKKQM
DKQDPLAHPLLQWVISSNRSHIVKLPVNRQLKFMHTPHQFLLLSSPPAKESNFRAAKKLFGSTFAFHGSH
IENWHSILRNGLVVASNTRLQLHGAMYGSGIYLSPMSSISFGYSGMNKKQKVSAKDEPASSSKSSNTSQS
QKKGQQSQFLQSRNLKCIALCEVITSSDLHKHGEIWVVPNTDHVCTRFFFVYEDGQVGDANINTQEGGIH
KEILRVIGNQTATG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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