NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39492.1 Public Mus musculus 6 Gars1 23 108 98 CCDS HistoryNCBI Gene:353172Re-query CCDS DB by CCDS ID:39492.1Re-query CCDS DB by GeneID:353172See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003572.9 ENSMUSP00000003572.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003572.9Link to Ensembl Protein Viewer:ENSMUSP00000003572.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003572Re-query CCDS DB by Protein ID:ENSMUSP00000003572
Original member Current member NCBI NM_180678.3 NP_851009.2 Accepted alive Link to Nucleotide Sequence:NM_180678.3Link to Protein Sequence:NP_851009.2Re-query CCDS DB by Nucleotide ID:NM_180678Re-query CCDS DB by Protein ID:NP_851009Link to BLAST:NP_851009.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851009.2 729 Q9CZD3 729 100% 0 0

Chromosomal Locations for CCDS 39492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 55038042 55038233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55046414 55046515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55048067 55048169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55050320 55050461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55052176 55052264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55053129 55053205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55055750 55055895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55060909 55061058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55063091 55063253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55065448 55065612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55068061 55068168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55069341 55069486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55073339 55073424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55075382 55075491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55076955 55077048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55077583 55077773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55079220 55079345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGCCCTGTCTGCTCCCCTCGCTGCTCAGAGCCACCCGCGCCGCGCTGCCGCTCCTGTCGCCGCCCCGAG
TGGTCGCAGCGTCCGCGTCTCAGCGGCTCCTCAGCGCTCCCGCGCAGCCCGCCGCCTCCCGGAGCAGCAT
GGACAGCGCGGAGGAGCTGCTGGCCCCACTGCGGCTAGCCGTGCGCCAGCAGGGAGACTTTGTACGGAAG
TTAAAAGAAGATAAAGCCCCACAAGTGGATGTGGACAGAGCAGTAGCTGAGCTCAAGGCCCGGAAGAGGG
TTCTGGAAGCAAAGGAGCTGGCATTGCAGCCCAAAGATGACATCGTAGATAGAGCAAAAATGGAAGATAC
GTTGAAGAGGAGGTTTTTCTACGATCAGGCTTTTGCTATTTATGGAGGTGTCAGTGGATTGTATGACTTC
GGGCCGGTAGGATGTGCTTTGAAGAACAATATCATCCAGGCCTGGAGGCAGCACTTTATCCAAGAGGAGC
AGATCCTGGAGATTGACTGCACCATGCTCACCCCTGAGCCAGTTTTAAAGACCTCTGGCCACGTAGACAA
ATTTGCTGACTTCATGGTGAAGGACGTGAAGAACGGAGAGTGCTTCCGAGCAGACCACCTGTTGAAAGCT
CATTTACAGAAACTGATGTCAGATAAGAAGTGCTCTGCTGAGAAGAAGTCAGAGATGGAAAGTGTCTTGG
CCCAGCTTGATAACTATGGACAACAAGAACTTGCGGATCTTTTTGTGAACTATAATGTAAAATCTCCCAC
CACTGGCAATGACCTGTCCCCTCCGGTACCTTTTAACTTAATGTTCCAGACCTTCATTGGGCCTGGAGGA
AATATGCCTGGATATCTGAGACCAGAAACTGCACAGGGAATTTTCCTGAATTTCAAACGACTTTTGGAAT
TCAACCAAGGGAAATTGCCTTTTGCTGCTGCCCAGATTGGAAACTCCTTCAGAAATGAGATCTCACCTCG
GTCTGGACTGATCCGAGTCAGGGAGTTTACAATGGCAGAGATTGAGCACTTTGTAGATCCCACTGAGAAA
GACCATCCCAAGTTCCAAAGTGTGGCCGACCTCTGCCTTTATTTGTACTCAGCAAAAGCCCAGGTCACTG
GACAGTCTGCTCGGAAGATGCGTCTGGGAGATGCTGTTGAACAGGGTGTGATTAACAACTCAGTATTAGG
CTATTTTATTGGCCGCATCTACCTCTACCTCACGAAGGTTGGAATATCTCCTGATAAACTCCGCTTCCGG
CAGCATATGGAGAATGAGATGGCCCATTATGCCTGCGACTGCTGGGATGCCGAGTCCAAAACGTCCTATG
GCTGGATTGAGATTGTTGGATGTGCTGACCGTTCCTGCTACGACCTCTCCTGTCATGCTCGAGCCACCAA
AGTTCCACTAGTAGCTGAGAAACCTCTGAAAGAACCCAAAACAGTTAACGTTGTACAGTTTGAGCCCAAC
AAGGGCGCCGTGGGCAAGGCGTACAAGAAGGATGCAAAGCTAGTGCTGGAGTATCTCAGCGCCTGTGATG
AGTGCTACATTTCAGAGATGGAGCTGCTGCTGAGTGAGAAAGGGGAATTCACTATTGAAACTGAAGGAAA
AACATTTCAGTTAACGAAAGACATGGTCAGTGTGAAGAGATTCCAGAAAACACTGCATGTGGAAGAAGTT
GTTCCGAGTGTAATTGAGCCCTCCTTTGGCTTGGGCAGGATCATGTATACCATATTGGAACATACATTCC
ATGTCCGAGAGGGAGATGAACAGAGAACGTTCTTCAGTTTCCCTGCTGTGGTTGCTCCATTCAAATGTTC
TGTCCTTCCACTGAGCCAGAACCAAGAGTTTATGCCATTTGTCAAGGAATTATCCGAAGCTCTGACCAGG
AACGGCGTGTCTCATAAAGTCGATGACTCCTCTGGGTCTATTGGAAGGCGCTATGCAAGAACTGATGAGA
TTGGCGTGGCTTTCGGCATCACTATTGACTTTGATACAGTGAACAAGACGCCCCACACTGCAACTCTGAG
GGACCGAGACTCCATGAGACAGATAAGGGCAGAGGTCTCTGAGCTGCCCAATGTGGTCCGCGATCTGGCC
AACGGCAACATTACCTGGGCTGATGTGGAGGCCAGGTACCCACTCTTTGAAGGGCAAGAGACTGGCAAGA
AGGAGACAGTAGAGGAATGA

Translation (729 aa):
MPCLLPSLLRATRAALPLLSPPRVVAASASQRLLSAPAQPAASRSSMDSAEELLAPLRLAVRQQGDFVRK
LKEDKAPQVDVDRAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDF
GPVGCALKNNIIQAWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKA
HLQKLMSDKKCSAEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPTTGNDLSPPVPFNLMFQTFIGPGG
NMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPTEK
DHPKFQSVADLCLYLYSAKAQVTGQSARKMRLGDAVEQGVINNSVLGYFIGRIYLYLTKVGISPDKLRFR
QHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPN
KGAVGKAYKKDAKLVLEYLSACDECYISEMELLLSEKGEFTIETEGKTFQLTKDMVSVKRFQKTLHVEEV
VPSVIEPSFGLGRIMYTILEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTR
NGVSHKVDDSSGSIGRRYARTDEIGVAFGITIDFDTVNKTPHTATLRDRDSMRQIRAEVSELPNVVRDLA
NGNITWADVEARYPLFEGQETGKKETVEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH