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Report for CCDS39456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39456.1 Public Mus musculus 6 Cald1 23 108 98 CCDS HistoryNCBI Gene:109624Re-query CCDS DB by CCDS ID:39456.1Re-query CCDS DB by GeneID:109624See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39456.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115021.7 ENSMUSP00000110673.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115021.7Link to Ensembl Protein Viewer:ENSMUSP00000110673.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115021Re-query CCDS DB by Protein ID:ENSMUSP00000110673
Original member Current member NCBI NM_145575.3 NP_663550.1 Accepted alive Link to Nucleotide Sequence:NM_145575.3Link to Protein Sequence:NP_663550.1Re-query CCDS DB by Nucleotide ID:NM_145575Re-query CCDS DB by Protein ID:NP_663550Link to BLAST:NP_663550.1

Chromosomal Locations for CCDS 39456.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34709645 34709697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34741789 34741935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34745619 34746015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34753443 34753588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34755634 34755898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34757984 34758124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34762110 34762153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34762251 34762329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34764956 34765093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34766103 34766198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34771048 34771128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34773223 34773228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGCTTAGCGGATCCGGGTCCCAGGGAAGGCGCTGCCTGGCCACACTCTCTCAAATTGCCTATCAGAGAA
ATGATGATGACGAAGAAGAGGCTGCCAGGGAACGGCGCCGCCGGGCCCGGCAGGAAAGGCTGCGGCAGAA
GCAAGAGGAAGAATCCTTGGGACAGGTGACAGACCAGGTGGAGGCCCATGTCCAGAACAGTGTCCCCGAT
GAAGAGTCTAAGCCAGCCTCCTCAAACACTCAGGTAGAAGGTGACGAGGAGGCTGCCTTACTGGAGCGCC
TGGCTAGACGAGAAGAGAGACGTCAAAAACGCCTTCAGGAAGCCTTAGAGCGTCAGAAGGAGTTTGATCC
GACCATAACAGATGGCAGTCTCTCAGGCCCAAGCCGAAGAATGCAAAATGACTCCGCCGAAAATGAGACA
GCAGAGGGGGAAGAAAAAAGAGAGAGTCGCTCAGGACGGTATGAGGTGGAAGAAACAGAAGTGGTCATCA
AGTCCTACCAGAAGAACAGCTATCAGGATGCTGAAGACAAAAAGAAAGAAGAAAAGGAAGAGGAGGAGCA
AGAGAAGCTGAAGGGAGGGAGCCTTGGCGAAAATCAGATCAAAGATGAGAAGATTAAAAAGGACAAAGAG
CCCAAAGAAGAAGTCAAGAGCTTCTTGGATAGAAAGAAAGGATTTACAGAAGTGAAGGCGCAGAATGGAG
AATTCATGACCCACAAACTTAAACAAACCGAGAATGCTTTCAGCCCCAGCCGTTCAGGAGGCCGGGCCAG
TGGGGACAAGGAAGCTGAAGGTGCCCCACAAGTGGAAGCCGGCAAGAGGCTGGAGGAGCTGCGCCGACGC
CGCGGGGAGACGGAGAACGAAGAGTTTGAAAAACTCAAACAGAAGCAACAGGAGGCAGCCTTGGAGCTGG
AAGAGCTGAAGAAAAAGAGGGAAGAGAGAAGGAAGGTCCTGGAGGAAGAGGAGCAGAGAAGAAAGCAGGA
GGAGGCTGATCGAAAAGCTAGGGAGGAGGAAGAGAAGAGGAGGTTAAAGGAAGAGATCGAAAGGAGAAGG
GCAGAAGCTGCTGAGAAGCGCCAGAAGATGCCAGAGGATGGCCTGTCAGAGGACAAGAAGCCGTTCAAGT
GCTTCACTCCTAAAGGCTCGTCTCTCAAGATAGAGGAACGAGCAGAGTTTTTGAATAAATCTGTGCAGAA
AAGTGGTGTCAGATCTACTCACCAAGCAGCAGTAGTCTCCAAGATTGACAGCCGGCTGGAGCAGTACACC
AATGCAATCGAGGGAACAAAGGCTTCGAAACCTATGAAGCCAGCAGCATCGGATCTCCCTGTTCCTGCCG
AGGGCGTCCGCAATATCAAGAGCATGTGGGAGAAGGGGAGCGTGTTCTCAGCCCCCTCTGCCTCAGGAAC
ACCCAATAAGGAAACTGCTGGCCTGAAGGTGGGAGTTTCCAGCCGCATTAACGAATGGCTAACTAAATCA
CCAGATGGCAACAAGTCACCTGCTCCCAAGCCTTCTGACTTGAGGCCAGGAGATGTATCTGGCAAGCGGA
ACCTCTGGGAAAAGCAATCTGTGGATAAGGTCACTTCCCCCACTAAGGTCTGA

Translation (530 aa):
MLSGSGSQGRRCLATLSQIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEAHVQNSVPD
EESKPASSNTQVEGDEEAALLERLARREERRQKRLQEALERQKEFDPTITDGSLSGPSRRMQNDSAENET
AEGEEKRESRSGRYEVEETEVVIKSYQKNSYQDAEDKKKEEKEEEEQEKLKGGSLGENQIKDEKIKKDKE
PKEEVKSFLDRKKGFTEVKAQNGEFMTHKLKQTENAFSPSRSGGRASGDKEAEGAPQVEAGKRLEELRRR
RGETENEEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKAREEEEKRRLKEEIERRR
AEAAEKRQKMPEDGLSEDKKPFKCFTPKGSSLKIEERAEFLNKSVQKSGVRSTHQAAVVSKIDSRLEQYT
NAIEGTKASKPMKPAASDLPVPAEGVRNIKSMWEKGSVFSAPSASGTPNKETAGLKVGVSSRINEWLTKS
PDGNKSPAPKPSDLRPGDVSGKRNLWEKQSVDKVTSPTKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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