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Report for CCDS3943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3943.1 Public Homo sapiens 5 NIM1K 24 110 108 CCDS HistoryNCBI Gene:167359Re-query CCDS DB by CCDS ID:3943.1Re-query CCDS DB by GeneID:167359See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3943.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326035.6 ENSP00000313572.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326035.6Link to Ensembl Protein Viewer:ENSP00000313572.2Re-query CCDS DB by Nucleotide ID:ENST00000326035Re-query CCDS DB by Protein ID:ENSP00000313572
Original member Current member EBI ENST00000512796.1 ENSP00000420849.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512796.1Link to Ensembl Protein Viewer:ENSP00000420849.1Re-query CCDS DB by Nucleotide ID:ENST00000512796Re-query CCDS DB by Protein ID:ENSP00000420849
Original member Current member NCBI NM_153361.4 NP_699192.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153361.4Link to Protein Sequence:NP_699192.1Re-query CCDS DB by Nucleotide ID:NM_153361Re-query CCDS DB by Protein ID:NP_699192Link to BLAST:NP_699192.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699192.1 436 Q8IY84 436 100% 0 0

Chromosomal Locations for CCDS 3943.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43245776 43246067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43277057 43277325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43279980 43280729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGACTGCAGTGTATATGAATGGAGGTGGCCTGGTGAACCCCCACTATGCCCGGTGGGATCGGCGCGACA
GT
GTAGAAAGTGGCTGTCAGACCGAGAGTAGCAAGGAGGGTGAGGAGGGACAGCCCCGCCAGCTGACGCC
C
TTCGAGAAACTGACACAGGACATGTCCCAGGATGAGAAGGTGGTGAGGGAGATCACGCTGGGGAAACGG
ATA
GGCTTCTACCGAATTCGAGGGGAAATCGGAAGTGGAAACTTCTCCCAAGTGAAGCTTGGGATTCACT
CC
CTAACCAAAGAAAAGGTGGCCATTAAGATCCTGGACAAGACCAAGTTAGACCAGAAAACCCAGAGGCT
A
CTATCCCGAGAAATCTCCAGCATGGAAAAGCTGCACCATCCCAACATCATCCGCCTTTACGAAGTGGTG
GAG
ACCCTATCCAAGCTGCACTTGGTGATGGAGTATGCAGGGGGTGGGGAGCTCTTCGGAAAAATTAGCA
CT
GAGGGGAAGCTCTCTGAACCAGAAAGCAAGCTCATCTTCTCCCAGATTGTGTCTGCCGTGAAGCACAT
G
CATGAAAACCAAATTATTCATAGAGATCTGAAAGCAGAAAATGTATTCTATACCAGTAATACTTGTGTG
AAG
GTGGGCGATTTTGGATTCAGCACAGTAAGCAAAAAAGGTGAAATGCTGAACACTTTCTGTGGGTCTC
CT
CCCTACGCTGCGCCTGAACTCTTCCGGGACGAGCACTACATCGGCATTTACGTGGATATCTGGGCCTT
G
GGGGTGCTTTTGTACTTCATGGTGACTGGCACCATGCCATTTCGGGCAGAAACCGTGGCCAAACTAAAA
AAG
AGCATCCTCGAGGGCACATACAGTGTACCGCCGCACGTGTCAGAGCCCTGCCACCGACTCATCCGAG
GA
GTCCTTCAGCAGATCCCCACGGAGAGGTACGGAATCGACTGCATCATGAATGATGAATGGATGCAAGG
G
GTGCCATACCCTACACCTTTGGAACCTTTCCAACTGGATCCCAAACATTTGTCGGAAACCAGCACTCTC
AAG
GAAGAAGAAAATGAGGTCAAAAGCACTTTAGAACATTTGGGCATTACAGAAGAGCATATTCGAAATA
AC
CAAGGGAGAGATGCTCGCAGCTCAATCACAGGGGTCTATAGAATTATTTTACATAGAGTCCAAAGGAA
G
AAGGCTTTGGAAAGTGTCCCAGTCATGATGCTACCAGACCCTAAAGAAAGAGACCTCAAAAAAGGGTCC
CGT
GTCTACAGAGGGATAAGACACACATCCAAATTTTGCTCGATTTTATAA


Translation (436 aa):
MTAVYMNGGGLVNPHYARWDRRDSVESGCQTESSKEGEEGQPRQLTPFEKLTQDMSQDEKVVREITLGKR
I
GFYRIRGEIGSGNFSQVKLGIHSLTK
EKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIIRLYEVV
E
TLSKLHLVMEYAGGGELFGKISTEGKLSEPESKLIFSQIVSAVKHM
HENQIIHRDLKAENVFYTSNTCV
K
VGDFGFSTVSKKGEMLNTFCGSPPYAAPELFRDEHYIGIYVDIWALGVLLYFMVTGTMPFRAETVAKLK
K
SILEGTYSVPPHVSEPCHRLIRGVLQQIPTERYGIDCIMNDEWMQGVPYPTPLEPFQLDPKHLSETSTL
K
EEENEVKSTLEHLGITEEHIRNNQGRDARSSITGVYRIILHRVQRKKALESVPVMMLPDPKERDLKKGS
R
VYRGIRHTSKFCSIL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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