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Report for CCDS39217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39217.1 Public Mus musculus 5 2900026A02Rik 23 108 98 CCDS HistoryNCBI Gene:243219Re-query CCDS DB by CCDS ID:39217.1Re-query CCDS DB by GeneID:243219See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050125.8 ENSMUSP00000058789.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050125.8Link to Ensembl Protein Viewer:ENSMUSP00000058789.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000050125Re-query CCDS DB by Protein ID:ENSMUSP00000058789
Original member Current member NCBI NM_172884.3 NP_766472.1 Accepted alive Link to Nucleotide Sequence:NM_172884.3Link to Protein Sequence:NP_766472.1Re-query CCDS DB by Nucleotide ID:NM_172884Re-query CCDS DB by Protein ID:NP_766472Link to BLAST:NP_766472.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766472.1 308 Q8BRV5 308 100% 0 0

Chromosomal Locations for CCDS 39217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113092419 113092497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113093102 113093244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113093966 113094084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113095590 113095764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113097598 113097838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113101459 113101577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113163058 113163108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGACTACTACTATTGCCCCAGCCTGCTGAAACTGCTGCGGTACCTGTGGAACCAGCTGAAGCAGTGTT
TCTCCAGGCGAGCCCCTGAGGCCAAGGATACTGACACCCTCGTGCAGGAAGCCGACAGCCAGTATGGGAC
CTGGGCAGACCAGCACCAGAACGGGGGCAGTTTTGGCCCCGAGTCTCCGTCTCCTGACAGCAGCGCAGCG
TCCGTGGGAAAGCAGCCCCCTGGCAGTCACTTGTCCTCATATACCGAGTCCACGTCGGTGGAGCAGCGTG
ACAGCTCCAGGGACCGGCGCAGCTCCAGCGTGGACCGCTCCAGTTCCGAGCTGGAGTCCACAGATGGCCC
AGAGGGACCGCCTCCATCAGACGTCTGCCCTGCCCAGGAAGATGATTTCTCCTTCATCCATCAAACCTCA
GTCCTCGACTCCAGTGCCCTCAAGACCCGGGTGCAGCTGAGTAAGCGAAGCCGTCGCAGGGCACCCATCT
CCCACTCGCTCCGGCGCAGCCAGTTCAGCGAGTCTGAGAGCCGATCCCCTCTGGAGGAGGAGTCACACAG
CACGTGGATGTTCAAGGACTCCACAGAGGAGAAGTCGCCCAGGAGGGATGAATCAGATGAAGAGCCGCCC
CGGGTGGAGAGGACCCCTGTCAGCCACCCGCAGAGGATGCCCGTGTTCCCAGGCATGGACCCCGCTGTGC
TGAAGGCTCAGCTGCCCAAGAGGTCAGAAGTGGACAGTCCTGGAGACTCTCTCAGCTGGACACCCCAGCC
CAAGAGTCCTAAGTCGCCCTTCCATCCCGGGGTGCTGGGTAGTCGGGTGCTGCCTCCCAGCACAGAGAAA
GAGGAGAGGTCAGAGGAGTGCTCGCCCCAGTGGCTAAAAGAGCTGAAGTCCAAGAAGAGGCAGAGCCTGT
ATGAGAATCAAGCCTGA

Translation (308 aa):
MDYYYCPSLLKLLRYLWNQLKQCFSRRAPEAKDTDTLVQEADSQYGTWADQHQNGGSFGPESPSPDSSAA
SVGKQPPGSHLSSYTESTSVEQRDSSRDRRSSSVDRSSSELESTDGPEGPPPSDVCPAQEDDFSFIHQTS
VLDSSALKTRVQLSKRSRRRAPISHSLRRSQFSESESRSPLEEESHSTWMFKDSTEEKSPRRDESDEEPP
RVERTPVSHPQRMPVFPGMDPAVLKAQLPKRSEVDSPGDSLSWTPQPKSPKSPFHPGVLGSRVLPPSTEK
EERSEECSPQWLKELKSKKRQSLYENQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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