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Report for CCDS39209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39209.1 Public Mus musculus 5 Golga3 23 108 98 CCDS HistoryNCBI Gene:269682Re-query CCDS DB by CCDS ID:39209.1Re-query CCDS DB by GeneID:269682See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112512.7 ENSMUSP00000108131.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112512.7Link to Ensembl Protein Viewer:ENSMUSP00000108131.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112512Re-query CCDS DB by Protein ID:ENSMUSP00000108131
Original member Current member NCBI NM_008146.4 NP_032172.3 Accepted alive Link to Nucleotide Sequence:NM_008146.4Link to Protein Sequence:NP_032172.3Re-query CCDS DB by Nucleotide ID:NM_008146Re-query CCDS DB by Protein ID:NP_032172Link to BLAST:NP_032172.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032172.3 1447 P55937-1 1447 99.7927% 0 3

Chromosomal Locations for CCDS 39209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 110181778 110181913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110184338 110184487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110185786 110185898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110187341 110187987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110188663 110188774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110189606 110189912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110192907 110193109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110193619 110193756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110201831 110201992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110202569 110202937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110203720 110203797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110204780 110205043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110205777 110205871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110207556 110207772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110208440 110208583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110209775 110209972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110212231 110212347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110216834 110216973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110217811 110217943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110218094 110218216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110220782 110220943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110221624 110221787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110222908 110223079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4344 nt):
ATGGATGGAGCATCAGCCAAACAGGATGGCCTCTGGGAAAGCAAGTCCAGCAGTGATGTTTCATCTTGCC
CTGAAGCCTCGCTGGAGATTGTGGGCTCTCTGGCCCGACTGCCTGATCAACAGGATACAGCTCAGGATGC
CAGTGTTGAGGTAAACAGAGGTTTTAAGGAAGAAGGAAGCCCAGATAGATCCAGCCAGGTGGCCATCTGT
CAGAATGGGCAGATCCCAGACCTTCAGTTGTCCCTTGATCCCACAACAAGCCCAGTGGGACCTGATGCCT
CTACAGGCTCCACTGCATCTTCATTGCCTTTGGAAAAGGAGGAGCAGGTTCGACTGCAGGCCCGGAAGCG
CCTGGAAGAGCAGCTGATGCAGTACCGAGTTAAGCGCCATCGGGAAAGGTCCAGTCAACCTGCAACTAAA
ATGAAACTTTTTAGTACACTTGATCCTGAGCTCATGTTAAATCCAGAAAATTTGCCAAGGGCCAGTACTG
TAGCTGTGACAAAAGAATATTCCTTCCTGCGTACCAGTGTTCCTCGAGGGCCCAAGGTAGGCAGCTTAGG
GCTGCTGGCACATTCTAAAGAGAAAAAGAACTCCAAATCAAGCAAGATTCGGTCTCTGGCTGACTATAGA
ACTGAAGATCCAAGTGACTCTGGTGGCCTTGGTTCTACTGCTGATGCTGTTGGAAGTTCCCTGAAACAAA
GTAGAAGTAGCACTTCAGTTGTGTCTGAGGTTAGCCCATCATCTGAGACTGATAACCGTGTAGAGAGTGC
CTCCATGACTGGGGATAGTGTGTCAGAGGCTGATGGAAATGAGAGTGACAGTTCCTCACACAGCAGCCTC
TCTGCCCGAGGGGCCTGTGGTGTCCTGGGGAACGTGGGCATGCCAGGAACAGCTTACATGGTTGATGGCC
AGGAGATTTCTGCTGAGGCCCTGGGCCAGTTTCCTTCAATTAAAGACGTACTACAGGCTGCAGCAGCCCA
GCACCAAGATCAGAACCAGGAAGCCAACGGAGAGGTGCGGAGCCGTAGAGACAGCATCTGCAGCAGTGTG
TCCATGGAGAGCTCCTTGGCTGAACCACAGGATGAATTGTTGCAGATTCTTAAAGATAAAAGGAGGCTTG
AAGGACAGGTGGAGGCTTTGTCATTAGAAGCCAGTCAGGCACTTCAAGAGAAGGCTGAGCTACAGGCCCA
GCTTGCTGCCCTGAGCACAAGGCTACAGGCACAGGTGGAACACAGCCACAGCAGCCAGCAGAAGCAAGAC
TCCCTTAGTTCTGAAGTGGACACTTTGAAGCAGTCTTGCTGGGATCTAGAGCGGGCCATGACTGACCTGC
AGAGCATGCTAGAAGCTAAAAATGCCAGCCTGGCATCCTCAAACAATGACCTACAAGTGGCAGAGGAGCA
GTATCAGAGACTGATGGCCAAAGTGGAGGACATGCAGAGAAACATCCTCAGCAAGGACAACACAGTGCAT
GACCTGCGGCAGCAGATGACAGCGCTACAGAGCCAGCTCCAGCAAGTACAGCTGGAGCGCACAACCCTGA
CCAGCAAACTACAAGCATCACAGGCTGAGATCACGTCTCTGCAGCATGCCCGGCAATGGTACCAACAGCA
GCTTACTTTGGCCCAGGAGGCCAGGGTCAGGCTGCAAGGAGAGATGGCCCATATCCAGGTTGGACAAATG
ACCCAGGCAGGCCTTTTGGAGCACCTGAAGCTTGAGAATGTGTCCCTATCGCATCAGCTGACAGAAACTC
AGCATCGATCCATCAAGGAGAAAGAGCGCATAGCTGTTCAGCTCCAGAGCATTGAGGCTGACATGTTAGA
TCAGGAGGCAGCATTTGTACAGATTCGGGAGGCGAAGACAATGGTGGAGGAGGACCTCCAAAGGAGGCTG
GAAGAATTTGAAGGTGAACGGGAGCAGTTACAGAAAGTGGCAGATGCAGCAGCATCCCTGGAGCAACAGT
TGGAACAGGTGAAGCTGACATTGTTCCAGCGAGATCAGCAGCTTGCAGCACTTCAGCAGGAGCACCTAGA
TGTGATAAAGCAGCTTACGTCGACGCAGGAGGCTCTGCAGGCCAAAGGGCAGTCTCTTGATGACCTGCAT
ACACGTTACGATGAGCTACAAGCAAGGCTGGAGGAGCTGCAGAGAGAGGCCGACTCCAGGGAGGATGCAA
TTCACTTCTTGCAGAATGAGAAGATTGTCTTGGAAGTGGCTCTACAATCGGCCAAGAGTGACAAGGAGGA
ACTTGACAGAGGAGCACGGCGTTTGGAAGAAGATACTGAGGAGACATCAGGACTTTTGGAACAATTGAGA
CAAGATTTGGCTGTCAAGTCCAACCAGGTGGAGCACTTGCAGCAGGAGACAGCCACGTTGAGAAAACAGA
TGCAGAAAGTAAAGGAGCAGTTTGTTCAGCAAAAGGTGATGGTAGAGGCATACCGGCGAGATGCTACTTC
CAAAGATCAACTCATCAATGAACTGAAAGCCACCAAAAAACGGCTGGACTCTGAGATGAAGGAACTGAGG
CAAGAGCTAATCAAGCTGCAGGGAGAGAAGAAGACTGTGGAAGTAGAGCACTCACGACTGCAGAAGGACA
TGTCCCTGGTTCACCAGCAGATGGCAGAGCTTGAGGGGCATCTTCAGTCAGTGCAGAAAGAACGAGATGA
AATGGAGATTCACCTGCAGTCTTTGAAGTTTGACAAAGAGCAGATGATAGCCCTTACCGAGGCCAATGAG
ACACTGAAGAAACAAATAGAAGAGCTGCAACAAGAGGCCAAGAAGGCCATCACAGAACAGAAGCAGAAGA
TGAAGAGGCTGGGCTCAGATCTGTCCAGCGCCCAGAAGGAGATGAAGACTAAGCACAAAGCTTATGAGAA
TGCTGTGAGCATTCTCAGCCGTCGCCTGCAGGAGGCTCTGGCTTCTAAGGAGGCTACAGATGCAGAGCTG
AACCAGCTCAGAGCTCAGAGCACAGGTGGCAGCAGTGACCCTGTCCTACATGAGAAGATTCGTGCTCTGG
AGGTGGAACTGCAGAATGTTGGCCAAAGCAAGATACTACTGGAGAAGGAGTTACAGGAGGTGATCACAAT
GACTAGCCAGGAGCTGGAAGAGTCCCGGGAGAAGGTGCTGGAGCTAGAAGATGAGCTTCAAGAATCCAGA
GGCTTCAGAAGGAAGATAAAACGTCTTGAAGAGTCAAATAAGAAACTAGCTCTGGAGTTAGAGCATGAGC
GAGGGAAGCTCACTGGCCTTGGACAATCTAATGCAGCGCTGCGGGAGCACAACAGCATTCTGGAGACTGC
ACTAGCCAAGAGGGAAGCTGACCTGGTACAGCTGAATCTGCAGGTGCAGGCAGTTTTACAGCGCAAAGAG
GAGGAGGATCGCCAGATGAAGCAACTTGTCCAAGCCTTACAAGTCTCACTAGAGAAAGAAAAGATGGAAG
TGAACAGCCTGAAGGAACAGATGGCTGCTGCCAGGATAGAAGCTGGGCACAACCGCCGCCACTTTAAGGC
AGCTACTTTGGAGCTGAGTGAGGTGAAGAAAGAATTGCAGGCCAAAGAACACCTGGTACAGACATTGCAG
GCCGAGGTGGATGAGCTCCAGATTCAGGATGGAAAGCATTCTCAAGAAATAGCACAATTCCAGACTGAGC
TGGCAGAAGCTAGAACCCAGCTCCAGCTCCTACAGAAGAAGCTAGATGAGCAGATGAGCCAGCAACCGAC
AGGGAGCCAAGAGATGGAAGATCTCAAATGGGAATTGGATCAGAAAGAACGAGAGATTCAGTCCCTGAAG
CAGCAGCTTGACTTGACAGAGCAACAGGGCAAGAAAGAACTGGAGGGGACACAGCAGACACTTCAGACCA
TCAAGTCTGAGTTGGAAATGGTACAAGAAGATCTGTCTGAGACGCAGAAGGATAAGTTTATGCTTCAAGC
CAAAGTGTCTGAACTGAAGAACAACATGAAGACTCTGCTGCAGCAGAACCAACAGCTCAAGCTGGATCTC
CGCCGCGGTGCAGCCAAGAAGAAAGAGCCAAAAGGTGAGTCCAACTCATCCAGTCCTGCAACACCCATCA
AGATACCAGATTGCCCTGTCCCAGCCTCATTGCTAGAGGAGCTGCTGAGGCCCCCACCCGCTGTGAGCAA
GGAACCCCTCAAGAATCTCAACAACTGTTTGCAGCAGCTCAAGCAGGAAATGGACAGTCTCCAGCGCCAG
ATGGAGGAGCATACCATCACTGTGCATGAGTCCCTGTCCTCGTGGGCTCAGGTGGAAGCTGCCCCAGCAG
AGCATGCCCATCCCCGGGGAGACACAAAACTGCATAATCAAAACAGTGTTCCCAGAGACGGGCTGGGCCA
ATGA

Translation (1447 aa):
MDGASAKQDGLWESKSSSDVSSCPEASLEIVGSLARLPDQQDTAQDASVEVNRGFKEEGSPDRSSQVAIC
QNGQIPDLQLSLDPTTSPVGPDASTGSTASSLPLEKEEQVRLQARKRLEEQLMQYRVKRHRERSSQPATK
MKLFSTLDPELMLNPENLPRASTVAVTKEYSFLRTSVPRGPKVGSLGLLAHSKEKKNSKSSKIRSLADYR
TEDPSDSGGLGSTADAVGSSLKQSRSSTSVVSEVSPSSETDNRVESASMTGDSVSEADGNESDSSSHSSL
SARGACGVLGNVGMPGTAYMVDGQEISAEALGQFPSIKDVLQAAAAQHQDQNQEANGEVRSRRDSICSSV
SMESSLAEPQDELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQD
SLSSEVDTLKQSCWDLERAMTDLQSMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVH
DLRQQMTALQSQLQQVQLERTTLTSKLQASQAEITSLQHARQWYQQQLTLAQEARVRLQGEMAHIQVGQM
TQAGLLEHLKLENVSLSHQLTETQHRSIKEKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEEDLQRRL
EEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLH
TRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALQSAKSDKEELDRGARRLEEDTEETSGLLEQLR
QDLAVKSNQVEHLQQETATLRKQMQKVKEQFVQQKVMVEAYRRDATSKDQLINELKATKKRLDSEMKELR
QELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANE
TLKKQIEELQQEAKKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVSILSRRLQEALASKEATDAEL
NQLRAQSTGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQESR
GFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKE
EEDRQMKQLVQALQVSLEKEKMEVNSLKEQMAAARIEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQ
AEVDELQIQDGKHSQEIAQFQTELAEARTQLQLLQKKLDEQMSQQPTGSQEMEDLKWELDQKEREIQSLK
QQLDLTEQQGKKELEGTQQTLQTIKSELEMVQEDLSETQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDL
RRGAAKKKEPKGESNSSSPATPIKIPDCPVPASLLEELLRPPPAVSKEPLKNLNNCLQQLKQEMDSLQRQ
MEEHTITVHESLSSWAQVEAAPAEHAHPRGDTKLHNQNSVPRDGLGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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