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Report for CCDS3893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3893.1 Public Homo sapiens 5 CDH9 24 110 108 CCDS HistoryNCBI Gene:1007Re-query CCDS DB by CCDS ID:3893.1Re-query CCDS DB by GeneID:1007See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3893.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000231021.9 ENSP00000231021.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000231021.9Link to Ensembl Protein Viewer:ENSP00000231021.4Re-query CCDS DB by Nucleotide ID:ENST00000231021Re-query CCDS DB by Protein ID:ENSP00000231021
Original member Current member NCBI NM_016279.4 NP_057363.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016279.4Link to Protein Sequence:NP_057363.3Re-query CCDS DB by Nucleotide ID:NM_016279Re-query CCDS DB by Protein ID:NP_057363Link to BLAST:NP_057363.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057363.3 789 Q9ULB4 789 100% 0 0

Chromosomal Locations for CCDS 3893.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 26881136 26881623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26885614 26885865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26885966 26886083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26889836 26889957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26890428 26890564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26902476 26902729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26903637 26903824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26905959 26906126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26906719 26906838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26915630 26915924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 26988106 26988333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2370 nt):
ATGAGGACTTACCATTATATACCATTATTCATCTGGACCTATATGTTCCATACAGTTGACACCATCCTAT
TACAAGAAAAACCTAACAGTTATTTATCAAGCAAAAAGATAGCGGGTCTGACAAAAGATGACGGTAAAAT
GCTACGTCGCACCAAGCGTGGCTGGATGTGGAATCAGTTCTTCTTATTGGAAGAGTACACAGGTACTGAC
ACACAATATGTAGGCAAGCTTCACACTGACCAAGATAAAGGAGATGGAAATTTAAAATACATACTAACAG
GAGATGGGGCTGGCAGTCTATTTGTTATAGATGAAAATACAGGAGACATTCATGCTGCAAAGAAACTAGA
CAGAGAAGAAAAATCTCTGTACATTCTTCGTGCCAAGGCTATAGACAGAAAAACTGGGCGGCAGGTGGAA
CCGGAATCGGAATTTATCATTAAAATACATGATATCAATGACAATGAGCCAAAATTTACAAAAGACTTAT
ACACTGCCAGTGTTCCTGAAATGTCTGGAGTCGGTACATCTGTTATACAAGTAACTGCAACAGATGCAGA
TGACGCCAACTATGGAAATAGTGCCAAAGTGGTCTATAGCATATTGCAAGGACAGCCATATTTTTCAGTG
GACCCAGAATCAGGCATAATAAAAACTGCATTACCAGACATGAGCAGAGAAAATAGAGAGCAGTACCAGG
TTGTTATACAGGCCAAAGACATGGGTGGCCAGATGGGAGGCCTTTCTGGAACCACCACAGTGAACATCAC
GCTGACAGATGTCAACAACAACCCTCCTCGATTTCCCCAGAGTACGTATCAATTTAATTCTCCTGAGTCT
GTACCTCTTGGAACTCATCTTGGAAGGATAAAAGCCAATGACCCTGACGTGGGGGAAAATGCAGAAATGG
AGTATAGCATTGCTGAAGGAGATGGTGCAGACATGTTCGATGTCATCACTGACAAGGATACACAGGAAGG
GATTATAACTGTCAAACAGAATTTAGATTTTGAAAATCAAATGCTCTATACTTTAAGAGTGGATGCAAGT
AACACTCACCCTGATCCACGATTCTTACACCTGGGACCTTTCAAAGATACAGCTGTGGTCAAAATATCTG
TGGAAGATATAGATGAGCCTCCTGTGTTCACTAAAGTCTCTTACTTGATAGAAGTAGATGAAGATGTAAA
GGAGGGCAGTATCATTGGACAGGTTACAGCATACGATCCAGATGCCAGGAACAATTTAATAAAGTACTCT
GTTGATCGGCATACTGATATGGACCGTATTTTTGGTATTCACTCAGAAAATGGTTCTATTTTCACTTTGA
AAGCCCTTGACCGGGAATCATCTCCTTGGCATAACATCACTGTTACAGCCACAGAAATAAATAACCCAAA
ACAAAGTAGCCACATCCCTGTCTTCATCAGAATTCTAGATATAAATGACCATGCTCCGGAATTTGCCATG
TATTATGAAACATTTGTTTGTGAAAATGCAAAACCTGGGCAGTTGATTCAGACTGTCAGTGTCATGGATA
AGGATGACCCTCCCCGAGGTCACAAATTCTTTTTTGAACCAGTGCCAGAATTTACTCTCAATCCGAATTT
CACCATTGTAGATAATAAAGATAATACAGCAGGAATCATGACTCGGAAAGATGGCTACAGTCGCAACAAA
ATGAGCACCTACTTATTGCCGATTTTAATCTTTGACAACGATTATCCAATTCAAAGCAGCACTGGTACAC
TCACTATCCGTGTGTGTGCCTGCGATAATCAAGGAAACATGCAATCCTGCACCGCAGAAGCCCTGATCCT
TTCAGCCGGCCTGAGCACGGGAGCTCTCGTTGCGATTCTACTCTGTGTCCTCATACTGCTTATTTTAGTC
GTGTTGTTTGCTGCATTGAAGAGGCAAAGAAAAAAGGAACCTCTGATAATTTCAAAAGACGATGTCCGGG
ACAACATTGTGACCTACAACGATGAAGGCGGCGGGGAAGAAGATACCCAAGCTTTTGACATTGGCACATT
AAGGAATCCAGAGGCAAGAGAAGACAGTAAACTTAGACGGGATGTAATGCCTGAAACTATTTTTCAGATA
AGGAGGACTGTGCCTCTGTGGGAAAATATTGATGTACAAGATTTTATCCATCGAAGATTAAAAGAAAACG
ACGCAGACCCAAGTGCACCTCCATATGATTCGCTGGCAACGTATGCCTATGAAGGGAATGATTCCATAGC
AGATTCGCTCAGTTCTTTGGAATCTCTCACAGCTGATTGTAACCAAGATTATGATTACCTCAGTGACTGG
GGGCCTCGTTTCAAAAAACTTGCCGATATGTATGGGGGTGATGATAGTGACCGAGACTAA

Translation (789 aa):
MRTYHYIPLFIWTYMFHTVDTILLQEKPNSYLSSKKIAGLTKDDGKMLRRTKRGWMWNQFFLLEEYTGTD
TQYVGKLHTDQDKGDGNLKYILTGDGAGSLFVIDENTGDIHAAKKLDREEKSLYILRAKAIDRKTGRQVE
PESEFIIKIHDINDNEPKFTKDLYTASVPEMSGVGTSVIQVTATDADDANYGNSAKVVYSILQGQPYFSV
DPESGIIKTALPDMSRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNNNPPRFPQSTYQFNSPES
VPLGTHLGRIKANDPDVGENAEMEYSIAEGDGADMFDVITDKDTQEGIITVKQNLDFENQMLYTLRVDAS
NTHPDPRFLHLGPFKDTAVVKISVEDIDEPPVFTKVSYLIEVDEDVKEGSIIGQVTAYDPDARNNLIKYS
VDRHTDMDRIFGIHSENGSIFTLKALDRESSPWHNITVTATEINNPKQSSHIPVFIRILDINDHAPEFAM
YYETFVCENAKPGQLIQTVSVMDKDDPPRGHKFFFEPVPEFTLNPNFTIVDNKDNTAGIMTRKDGYSRNK
MSTYLLPILIFDNDYPIQSSTGTLTIRVCACDNQGNMQSCTAEALILSAGLSTGALVAILLCVLILLILV
VLFAALKRQRKKEPLIISKDDVRDNIVTYNDEGGGEEDTQAFDIGTLRNPEAREDSKLRRDVMPETIFQI
RRTVPLWENIDVQDFIHRRLKENDADPSAPPYDSLATYAYEGNDSIADSLSSLESLTADCNQDYDYLSDW
GPRFKKLADMYGGDDSDRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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