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Report for CCDS38717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38717.1 Public Mus musculus 4 Spmip6 23 108 98 CCDS HistoryNCBI Gene:73721Re-query CCDS DB by CCDS ID:38717.1Re-query CCDS DB by GeneID:73721See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030152.12 ENSMUSP00000030152.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030152.12Link to Ensembl Protein Viewer:ENSMUSP00000030152.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030152Re-query CCDS DB by Protein ID:ENSMUSP00000030152
Original member Current member NCBI NM_001048005.1 NP_001041470.1 Accepted alive Link to Nucleotide Sequence:NM_001048005.1Link to Protein Sequence:NP_001041470.1Re-query CCDS DB by Nucleotide ID:NM_001048005Re-query CCDS DB by Protein ID:NP_001041470Link to BLAST:NP_001041470.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041470.1 260 Q2MH31-1 260 100% 0 0

Chromosomal Locations for CCDS 38717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41505568 41505654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41507099 41507328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41507521 41507593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41508517 41508629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41511432 41511576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41517028 41517162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGTTCCTCTTCTCCCGGAAGACCAAGACCCCCATCAGCACCTACAGTGACTCCTACAGGGCTCCTACCT
CCATCAAGGAGGTCTATAAGGACCCACCACTATGGGCCTGGGAAGCCAACAAGTTTGTGACCCCAGGTCT
GACTCAGACTATGCACCGCCACGTGGACCCTGAGGCCCTGCAGAAGATGACCAAATGTGCCGCACAGGAC
TACACCTATAAGAGTTCCATATCAGGTCACCCTTATTTGCCTGAGAAATACTGGCTCTCTCCAGATGAAG
AGGACAAATGCTGTCCGAGCTACCTGGACAATGACCGGTACAACACGTGGAAGACGAGTCCTTGCAGCAA
CTACTGGAACAAGTATACCGGCTGTCTTCCTCGACTGTCCAAGGACACCGGGATGGAGTCAGTTCGAGGA
ATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGAGCGCGAGGTAGTGGTGAACATGC
TGAACTCGCTGTCTCGGAACCGGACTCTGCCGCAGATTGTACCCCGCTGTGGGTGCGTGGACCCTCTCCC
GGGCCGATTGCCATACCAAGGATATGAAAGCCCTTGCTCCGGCCGCCACTACTGTCTGCGCGGGATGGAC
TACTGCACCACCCGGGAGCCTAGCACAGAACGCCGCCTGCGGCCTTTGTGCTCGCAGCAGCCGACTGAGT
GTGTCGCCCTTCGGTCACCGGCCAGGAATGCAATGTGCTGTTACAACTCCCCCGCCATCATTTTACCCGT
ATCCCAACCTTAG

Translation (260 aa):
MFLFSRKTKTPISTYSDSYRAPTSIKEVYKDPPLWAWEANKFVTPGLTQTMHRHVDPEALQKMTKCAAQD
YTYKSSISGHPYLPEKYWLSPDEEDKCCPSYLDNDRYNTWKTSPCSNYWNKYTGCLPRLSKDTGMESVRG
MPLEYPPKQERLNAYEREVVVNMLNSLSRNRTLPQIVPRCGCVDPLPGRLPYQGYESPCSGRHYCLRGMD
YCTTREPSTERRLRPLCSQQPTECVALRSPARNAMCCYNSPAIILPVSQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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