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Report for CCDS38584.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38584.1 Public Mus musculus 3 Chil5 23 108 98 CCDS HistoryNCBI Gene:229687Re-query CCDS DB by CCDS ID:38584.1Re-query CCDS DB by GeneID:229687See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 38584.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200146.1 ENSMUSP00000142477.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200146.1Link to Ensembl Protein Viewer:ENSMUSP00000142477.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200146Re-query CCDS DB by Protein ID:ENSMUSP00000142477
Original member Current member NCBI NM_001080816.2 NP_001074285.1 Accepted alive Link to Nucleotide Sequence:NM_001080816.2Link to Protein Sequence:NP_001074285.1Re-query CCDS DB by Nucleotide ID:NM_001080816Re-query CCDS DB by Protein ID:NP_001074285Link to BLAST:NP_001074285.1

Chromosomal Locations for CCDS 38584.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 106017132 106017250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106017967 106018108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106018195 106018314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106019137 106019322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106019589 106019712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106019889 106020013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106024067 106024232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106024889 106024945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106028718 106028919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106029430 106029459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106032790 106032814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGACCAAGCTCATTCTTGTCACAGGTTTGGCACTTCTGCTGAATCCTCAGCTGGGCTCTGCCTACCAGC
TGATGTGCTACTATAATAATGTAGCCCAGAACAGACCAAAATTGGGAAGTTTCAATCCTGCTGATATTGA
CCCCTGCCTGTGTACTCACCTCATCTATGCCTTTGCTGGTATGCAGAACAACAAGGTTACCATGAGAAGC
ATGAATGACTTGACTGACTACCAAGCCTTAAATACTCTAAAAAGCAGAAACGTACAGCTGAAAACCCTCC
TGGCCATTGGAGGACGGGACTTTGGACCTGCCCCGTTCAGTGCCATGGTCTCCACTCCACACAACCAACA
GACTTTCATTAACTCAGCCATCAAATTCCTGCGCCAGTATGGGTTTGATGGACTGAACCTGGACTGGCAG
TTCCCTGGGTCTCGTGGAAGCCCTTCTAGGGACAAACATCTCTTCACTGTCCTGGTACAGAAAATACGTG
AGGCTTTTGAACTGGAAGCCATTGAAAACAAGAGCCCTAGGCTGATGGTCACTGCCACAGTAGCTGGTGT
CATCTCTACCATCCAATCTGGCTATGAGATCCCTCAATTATCACACTTCCTAGACTACATCCAGGTCATG
ACTTACAATCTCCATGGCTCCCAAGATGGCTATACTGGGGAAAACAGCCCACTCTACAAATCCCTAAATG
ACACTGGCATCAACACCCTCCTCAATGTGGATTACATCATGACCTACTGGAATGAAAATGGGGCAGCACC
TGAGAAGCTCATTGTTGGATTCCCAGCATATGGACAAACCTTCACCCTGAGTGACCCCTCCAACAATGGA
ATAAGTGCTCCTACTGCTAGTGCTGGTACACTAGGGCCCTACACAGAAGAGTCTGGCACCTGGGCCTATT
ATGAGATTTGCTCCTTCCTGAATGATGGAGCCACTGAAGCCTGGGATTCTGCGCAGGAAGTACCCTATGC
CTATCAGGGAAACAAATGGGTTGGCTATGATAATGTCAAGAGTTTTCGAATCAAGGCTGAATGGCTTAAA
CAGAACAACCTGGGAGGTGCCATGTTATGGACCCTTGATATGGATGACTTCACTGGCTCTTTCTGCAACC
AGGGCCAATTCCCTCTGACATCTACCCTGAAGAATGCCCTCTTAGTGTACAGCACAAGTTGCATGGCCTC
TGTTTCAGATCTTCAGCAAGTAAATGCTCCTCTATACAGTGGGAATAGGAACTGGAAGAGAGGCTCTAAA
GCAATGGATTCTGTGTCACCTGTGCCAAGAGAATAA

Translation (431 aa):
MTKLILVTGLALLLNPQLGSAYQLMCYYNNVAQNRPKLGSFNPADIDPCLCTHLIYAFAGMQNNKVTMRS
MNDLTDYQALNTLKSRNVQLKTLLAIGGRDFGPAPFSAMVSTPHNQQTFINSAIKFLRQYGFDGLNLDWQ
FPGSRGSPSRDKHLFTVLVQKIREAFELEAIENKSPRLMVTATVAGVISTIQSGYEIPQLSHFLDYIQVM
TYNLHGSQDGYTGENSPLYKSLNDTGINTLLNVDYIMTYWNENGAAPEKLIVGFPAYGQTFTLSDPSNNG
ISAPTASAGTLGPYTEESGTWAYYEICSFLNDGATEAWDSAQEVPYAYQGNKWVGYDNVKSFRIKAEWLK
QNNLGGAMLWTLDMDDFTGSFCNQGQFPLTSTLKNALLVYSTSCMASVSDLQQVNAPLYSGNRNWKRGSK
AMDSVSPVPRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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