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Report for CCDS38374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38374.1 Public Mus musculus 2 Mtg2 23 108 98 CCDS HistoryNCBI Gene:52856Re-query CCDS DB by CCDS ID:38374.1Re-query CCDS DB by GeneID:52856See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38374.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087563.6 ENSMUSP00000084843.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087563.6Link to Ensembl Protein Viewer:ENSMUSP00000084843.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000087563Re-query CCDS DB by Protein ID:ENSMUSP00000084843
Original member Current member EBI ENSMUST00000108901.7 ENSMUSP00000104529.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108901.7Link to Ensembl Protein Viewer:ENSMUSP00000104529.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108901Re-query CCDS DB by Protein ID:ENSMUSP00000104529
Original member Current member NCBI NM_001083328.1 NP_001076797.1 Accepted alive Link to Nucleotide Sequence:NM_001083328.1Link to Protein Sequence:NP_001076797.1Re-query CCDS DB by Nucleotide ID:NM_001083328Re-query CCDS DB by Protein ID:NP_001076797Link to BLAST:NP_001076797.1
Original member Current member NCBI NM_001083329.1 NP_001076798.1 Accepted alive Link to Nucleotide Sequence:NM_001083329.1Link to Protein Sequence:NP_001076798.1Re-query CCDS DB by Nucleotide ID:NM_001083329Re-query CCDS DB by Protein ID:NP_001076798Link to BLAST:NP_001076798.1
Original member Current member NCBI NM_028422.1 NP_082698.1 Accepted alive Link to Nucleotide Sequence:NM_028422.1Link to Protein Sequence:NP_082698.1Re-query CCDS DB by Nucleotide ID:NM_028422Re-query CCDS DB by Protein ID:NP_082698Link to BLAST:NP_082698.1
Original member Current member NCBI NM_181424.3 NP_852089.2 Accepted alive Link to Nucleotide Sequence:NM_181424.3Link to Protein Sequence:NP_852089.2Re-query CCDS DB by Nucleotide ID:NM_181424Re-query CCDS DB by Protein ID:NP_852089Link to BLAST:NP_852089.2

Chromosomal Locations for CCDS 38374.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180078623 180078823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180082086 180082233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180083345 180083460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180084064 180084282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180084451 180084589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180085380 180085774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGTATCTACCAGACTTGTCTTGGCAAGGACTTGCACTGTGTTTGAGGGTGTTTTGAAATGGGCTCCAT
CCACACGTGCTGTCCTCAGGCCTAGCCACCTTCTTCTACAAGCATCATGCAGATTGCTCTCTGTGGGCAT
CGTAGACCACGCTAAGCACCGGGAGCCTTCTGGGAAGAAGGTTCTGTCAGAGAAGAAACTGAAAAGGCAT
TTCGTGGATCACCGGAGAGTGCTGGTCCGTGGAGGAAGCGGGGGCTCTGGCATGAGCTGCTTCCACAGTG
AGCCCCGCAAGGAGTTTGGAGGCCCTGATGGTGGAGATGGAGGAAATGGTGGACACATCATCCTGAGAGT
TGACCAGCAAGTCAAGTCCTTGTCCTCAGTCTTATCCCAGTATCAGGGCTTCAGTGGAGAAGACGGTGGC
AGTAAAAACTGCTCTGGACGAGGTGGTGCCACCCTCTACATTCAGGTCCCTGTGGGTACCTTGGTGAAAG
AAGGAGACAAGATCGTGGCTGACCTCTCTAACCTGGGAGACGAGTACGTGGCTGCTCTCGGGGGTGCAGG
AGGAAAAGGCAATCGTTTCTTCCTGGCCAACGACAACCGTGCCCCTGTAACTTGCACCCCTGGACAACCG
GGTCAGGAGCGGGTCCTCTACTTGGAACTCAAGACAATGGCTCACGCTGGGATGGTTGGCTTCCCAAATG
CTGGGAAATCCTCTCTCCTTCGAGCCATTTCAAATGCAAAACCTGCTGTAGCTTCCTACCCGTTCACCAC
CTTGAACCCTCACGTGGGGATCGTTCACTATGAAGGCCACCAACAGGTAGCAGTGGCAGACATCCCAGGC
ATCATCCGAGGTGCACACCAGAACAAGGGCCTGGGCCTCAGCTTCCTCAGGCACATCGAGCGTTGTCGCT
TCTTCCTGTTTGTGGTAGATCTTACCTTGCCTGAGCCGTGGACTCAGGTTGATGATTTAAAATATGAACT
AGAGAAGTTTGAAGAAGGCCTGTCAGAGAGGTCCCACGTGATCATTGCAAATAAGATCGATCTCCCGCAA
GCCAGAGCCCGCCTGCCTCAGCTGCAGGCCCGCCTCGGACAGGAGGCCATAGGCCTGTCGGCGCTGACTG
GGGAGAACCTGGAGCAGCTGCTTCTGCACCTGAAGGAGCTGCATGATGCCCACATAGAGGCCGAGCTGGA
GCAGGGCCGCCAGCCTCTCAGGTGGTAG

Translation (405 aa):
MVSTRLVLARTCTVFEGVLKWAPSTRAVLRPSHLLLQASCRLLSVGIVDHAKHREPSGKKVLSEKKLKRH
FVDHRRVLVRGGSGGSGMSCFHSEPRKEFGGPDGGDGGNGGHIILRVDQQVKSLSSVLSQYQGFSGEDGG
SKNCSGRGGATLYIQVPVGTLVKEGDKIVADLSNLGDEYVAALGGAGGKGNRFFLANDNRAPVTCTPGQP
GQERVLYLELKTMAHAGMVGFPNAGKSSLLRAISNAKPAVASYPFTTLNPHVGIVHYEGHQQVAVADIPG
IIRGAHQNKGLGLSFLRHIERCRFFLFVVDLTLPEPWTQVDDLKYELEKFEEGLSERSHVIIANKIDLPQ
ARARLPQLQARLGQEAIGLSALTGENLEQLLLHLKELHDAHIEAELEQGRQPLRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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