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Report for CCDS38131.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
38131.1 |
Public |
Mus musculus |
2 |
Scn1a |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:20265](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:38131.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:20265](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana)
Attributes |
Inferred exon combination |
Sequence IDs included in CCDS 38131.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000077489.11 |
ENSMUSP00000076697.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000077489.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000076697.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000077489](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000076697](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_018733.2 |
NP_061203.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_018733.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_061203.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_018733](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_061203](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_061203.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_061203.2 |
1998 |
A2APX8-2 |
1998 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 38131.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5997 nt): ATGGAGCAAACAGTGCTTGTACCACCAGGACCTGACAGCTTCAACTTCTTCACCAGAGAATCCCTTGCAG CTATTGAAAGGCGCATTGCAGAAGAGAAGGCTAAGAATCCCAAGCCAGACAAAAAAGATGATGATGAAAA TGGCCCAAAGCCAAACAGTGACTTGGAAGCTGGGAAGAACCTTCCATTTATCTATGGAGACATTCCTCCA GAGATGGTGTCGGAGCCTCTGGAGGACCTGGACCCCTACTATATCAATAAGAAGACTTTTATAGTATTGA ATAAAGGGAAGGCCATCTTCCGGTTCAGTGCCACCTCCGCCCTGTACATTTTAACACCCTTCAATCCTCT TAGGAAAATAGCTATTAAGATTTTGGTACACTCATTATTCAGCATGTTAATCATGTGCACTATTTTGACA AACTGTGTATTTATGACAATGAGTAACCCTCCCGACTGGACAAAGAATGTGGAGTACACCTTCACAGGAA TATATACTTTTGAATCACTAATAAAAATTATTGCAAGGGGCTTCTGTTTAGAAGATTTTACTTTCCTTCG CGACCCATGGAACTGGCTGGACTTCACTGTCATTACATTCGCATATGTGACGGAGTTTGTGGACCTGGGC AATGTCTCAGCATTGAGAACATTCAGAGTTCTTCGAGCATTGAAAACTATTTCAGTCATTCCAGGCCTGA AGACCATCGTGGGGGCCCTGATCCAGTCGGTGAAGAAGCTGTCTGACGTCATGATACTCACTGTGTTCTG TCTCAGTGTGTTCGCACTCATCGGGTTGCAGCTCTTCATGGGCAACCTGAGGAATAAATGTGTACAGTGG CCTCCCACCAACGCTTCCCTTGAGGAACATAGCATAGAGAAGAATATAACTATGGATTACAATGGCACAC TTGTAAATGAAACCGTGTTCGAGTTTGACTGGAAATCATACATTCAAGACTCAAGATATCATTATTTCCT GGAGGGTGTTTTAGATGCACTGCTGTGTGGAAATAGCTCTGATGCAGGCCAATGTCCAGAAGGATATATG TGTGTAAAAGCTGGTAGAAACCCTAATTATGGTTACACAAGCTTTGATACCTTCAGTTGGGCATTTTTGT CCCTGTTTCGACTGATGACTCAGGACTTCTGGGAAAATCTATACCAACTGACATTGCGTGCTGCTGGCAA AACCTACATGATATTTTTTGTGCTGGTCATTTTCTTGGGCTCATTCTACCTGATAAACTTGATCCTGGCT GTGGTGGCCATGGCCTATGAGGAGCAGAATCAGGCCACACTGGAGGAGGCTGAACAGAAAGAGGCAGAAT TTCAGCAGATGTTGGAGCAACTTAAGAAGCAGCAAGAGGCTGCACAGCAGGCAGCGGCTACAACAGCCTC AGAACATTCCAGGGAGCCCAGTGCAGCAGGCAGGCTCTCAGATAGCTCTTCAGAAGCCTCTAAGTTGAGT TCGAAGAGTGCTAAAGAAAGACGAAATCGGAGGAAAAAAAGGAAACAGAAAGAGCAGTCTGGAGGAGAAG AGAAAGATGATGATGAATTCCACAAGTCTGAGTCTGAAGACAGCATCAGGAGGAAGGGGTTTCGCTTCTC CATAGAAGGGAATAGACTGACATATGAAAAGAGGTACTCTTCCCCGCATCAGTCTCTGTTAAGCATTCGT GGTTCCCTGTTCTCCCCAAGACGCAATAGCAGAACAAGTCTTTTCAGCTTTAGAGGGCGAGCCAAGGATG TGGGGTCTGAGAATGACTTTGCTGATGATGAACACAGCACCTTTGAGGATAATGAGAGCCGTAGAGACTC ACTGTTCGTTCCCCGAAGACACGGAGAGCGACGCAACAGTAACCTGAGCCAGACCAGCAGGTCCTCCCGA ATGCTGGCGGTGTTTCCAGCCAATGGGAAGATGCACAGCACGGTGGATTGCAATGGTGTGGTTTCCTTGG TTGGTGGACCCTCAGTTCCCACATCGCCAGTTGGACAGCTTCTGCCAGAGGGAACAACCACTGAAACTGA GATGAGAAAGAGGAGGTCGAGCTCTTTCCATGTTTCCATGGACTTTCTAGAAGATCCTTCCCAGAGGCAA AGGGCAATGAGCATAGCCAGCATCTTAACAAATACAGTAGAAGAACTAGAAGAATCCAGGCAGAAATGTC CACCCTGTTGGTATAAATTTTCCAACATATTCTTAATTTGGGACTGTTCTCCATATTGGCTGAAAGTTAA ACATATTGTCAACCTGGTGGTGATGGACCCATTTGTTGATCTGGCCATTACCATCTGCATTGTGTTAAAT ACGCTCTTCATGGCTATGGAGCACTACCCCATGACTGAACATTTCAACCATGTTCTTACAGTGGGAAACT TGGTCTTCACTGGGATTTTCACAGCAGAAATGTTCCTGAAAATCATCGCAATGGATCCTTACTATTACTT CCAAGAAGGCTGGAATATCTTTGATGGTTTCATTGTGACACTCAGCCTGGTAGAACTTGGCCTTGCCAAT GTGGAAGGATTGTCAGTTCTCCGTTCATTTCGACTGCTCCGAGTGTTCAAGTTGGCAAAGTCTTGGCCCA CACTGAATATGCTCATTAAGATCATTGGTAACTCGGTGGGAGCACTGGGCAACCTGACTCTGGTGTTGGC CATCATTGTCTTTATTTTTGCCGTGGTTGGCATGCAGCTGTTTGGAAAAAGTTACAAAGATTGTGTCTGC AAAATTGCCACTGACTGCAAACTCCCACGTTGGCACATGAACGACTTCTTCCACTCGTTCCTGATCGTGT TCCGCGTGCTGTGTGGGGAGTGGATAGAGACCATGTGGGACTGCATGGAGGTGGCAGGACAAGCTATGTG CCTTACTGTCTTCATGATGGTCATGGTGATTGGGAACCTTGTGGTCTTGAACCTCTTTCTGGCCTTGCTT CTGAGCTCATTTAGTGCAGACAACCTTGCAGCCACTGATGATGACAATGAGATGAACAACCTGCAGATTG CTGTGGACAGGATGCACAAAGGAATAGCTTATGTAAAAAGAAAAATATATGAATTCATTCAACAATCCTT TGTTAAGAAACAGAAGATTCTAGATGAAATTAAGCCACTTGATGATCTAAACAACAGAAAAGACAATTGT ATCTCTAACCACACAACAGAAATTGGGAAAGATCTGGACTGTCTGAAAGATGTGAATGGAACCACAAGTG GCATAGGGACGGGCAGCAGTGTGGAGAAGTACATCATTGATGAGAGTGATTATATGTCATTCATAAACAA CCCCAGCCTCACTGTGACTGTGCCCATTGCTGTGGGAGAGTCTGACTTTGAGAACTTAAACACAGAAGAC TTTAGCAGTGAATCAGATCTAGAAGAAAGCAAAGAGAAACTCAACGAAAGCAGTAGCTCCTCAGAGGGAA GCACAGTAGACATTGGGGCGCCTGCAGAGGAACAGCCTGTCATTGAACCAGAAGAAACCCTTGAGCCCGA AGCTTGCTTCACTGAAGGCTGTGTCCAGAGATTCAAGTGCTGTCAAATCAGCGTGGAAGAAGGAAGAGGG AAACAGTGGTGGAACCTACGGAGGACGTGCTTCCGAATAGTTGAACACAACTGGTTTGAGACCTTCATTG TGTTCATGATTCTCCTGAGTAGTGGTGCCCTGGCCTTTGAGGATATATATATTGATCAGCGAAAGACGAT CAAAACCATGCTGGAGTATGCTGACAAAGTCTTCACTTACATTTTCATCCTGGAGATGCTCCTCAAATGG GTGGCCTATGGCTATCAAACATACTTCACCAATGCCTGGTGTTGGCTAGACTTCTTAATTGTTGATGTTT CATTGGTCAGTTTAACAGCAAATGCCTTGGGTTACTCTGAACTCGGGGCCATCAAATCCCTAAGGACACT AAGAGCTCTGAGACCCCTAAGAGCCTTATCACGATTTGAAGGGATGAGGGTGGTTGTGAATGCCCTGTTA GGAGCAATTCCATCCATCATGAATGTGCTTCTGGTTTGCCTTATATTCTGGCTAATTTTCAGCATCATGG GCGTAAATTTGTTTGCTGGCAAATTCTACCACTGTGTTAACACCACAACTGGTGACATATTTGAGATCAG CGAAGTCAATAATCATTCTGATTGCCTAAAACTAATAGAAAGAAATGAGACCGCCCGGTGGAAAAATGTG AAAGTAAACTTTGATAATGTAGGATTTGGGTATCTTTCTTTGCTTCAAGTTGCCACATTTAAGGGCTGGA TGGATATCATGTATGCTGCAGTTGATTCCAGAAATGTTGAACTACAGCCTAAGTATGAGGAAAGCCTGTA CATGTATTTGTACTTCGTCATCTTCATCATCTTCGGGTCCTTCTTTACCCTGAACCTGTTTATTGGTGTC ATTATCGACAATTTCAACCAGCAAAAGAAGAAGTTTGGAGGTCAAGACATCTTTATGACAGAAGAACAGA AGAAATACTATAATGCAATGAAGAAATTAGGATCAAAAAAGCCACAAAAGCCTATCCCTCGACCTGGAAA CAAATTTCAAGGAATGGTTTTTGACTTTGTAACCAGACAAGTGTTTGATATCAGCATCATGATCCTCATC TGTCTGAACATGGTGACCATGATGGTGGAAACGGATGACCAGAGCGATTATGTGACAAGCATTTTGTCAC GCATCAACCTGGTGTTCATCGTCCTGTTCACCGGCGAGTGTGTGCTCAAGCTCATCTCGCTCCGCCATTA TTATTTCACCATTGGATGGAACATTTTCGATTTTGTGGTGGTCATCCTCTCCATTGTAGGGATGTTTCTT GCGGAGCTAATAGAAAAGTATTTTGTGTCTCCTACCCTGTTCCGAGTCATCCGCCTGGCCAGGATTGGAC GAATCCTACGCCTGATCAAAGGTGCCAAGGGGATCCGCACGCTGCTCTTTGCTCTGATGATGTCCCTTCC TGCGCTGTTTAACATCGGCCTCCTGCTTTTTCTCGTCATGTTCATCTACGCCATCTTTGGGATGTCCAAC TTTGCCTATGTTAAGAGGGAAGTTGGGATTGATGACATGTTCAACTTTGAGACCTTCGGCAACAGCATGA TCTGCCTGTTCCAAATCACCACCTCTGCGGGCTGGGATGGACTGCTGGCCCCCATCCTCAACAGCAAACC CCCTGACTGTGACCCTAATAAAGTTAACCCTGGAAGCTCGGTGAAGGGAGACTGTGGGAACCCATCTGTG GGGATTTTCTTTTTTGTCAGCTACATCATCATATCCTTCCTGGTTGTGGTGAACATGTACATTGCTGTCA TCCTGGAGAACTTCAGCGTTGCCACAGAAGAAAGTGCAGAGCCTCTGAGTGAGGACGACTTTGAGATGTT CTACGAGGTCTGGGAGAAGTTCGACCCTGACGCCACCCAGTTCATGGAATTTGAAAAATTATCTCAGTTT GCAGCTGCTCTAGAACCCCCTCTCAATTTGCCACAACCAAACAAACTTCAGCTCATTGCCATGGACCTGC CCATGGTGAGTGGAGACCGCATCCACTGCCTGGACATCTTATTTGCTTTTACAAAGCGGGTGTTGGGTGA GAGTGGAGAGATGGATGCTCTTCGAATCCAGATGGAAGAGCGGTTCATGGCTTCCAACCCCTCCAAGGTC TCTTATCAGCCCATCACTACTACATTAAAACGCAAACAAGAGGAGGTGTCAGCTGTTATCATTCAGCGAG CTTATAGGCGCCACCTTTTGAAGCGAACAGTAAAACAAGCTTCATTCACATACAATAAGAACAAACTCAA AGGTGGGGCTAATCTTCTTGTAAAAGAAGACATGCTCATTGACAGAATAAACGAAAACTCTATTACGGAG AAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGG AGAAACACGAGCAGGAAGGGAAGGATGAAAAAGCCAAAGGGAAATGA
Translation (1998 aa): MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKNLPFIYGDIPP EMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKIAIKILVHSLFSMLIMCTILT NCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVDLG NVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQW PPTNASLEEHSIEKNITMDYNGTLVNETVFEFDWKSYIQDSRYHYFLEGVLDALLCGNSSDAGQCPEGYM CVKAGRNPNYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAATTASEHSREPSAAGRLSDSSSEASKLS SKSAKERRNRRKKRKQKEQSGGEEKDDDEFHKSESEDSIRRKGFRFSIEGNRLTYEKRYSSPHQSLLSIR GSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSLFVPRRHGERRNSNLSQTSRSSR MLAVFPANGKMHSTVDCNGVVSLVGGPSVPTSPVGQLLPEGTTTETEMRKRRSSSFHVSMDFLEDPSQRQ RAMSIASILTNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVLN TLFMAMEHYPMTEHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVTLSLVELGLAN VEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVC KIATDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALL LSSFSADNLAATDDDNEMNNLQIAVDRMHKGIAYVKRKIYEFIQQSFVKKQKILDEIKPLDDLNNRKDNC ISNHTTEIGKDLDCLKDVNGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTED FSSESDLEESKEKLNESSSSSEGSTVDIGAPAEEQPVIEPEETLEPEACFTEGCVQRFKCCQISVEEGRG KQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFTYIFILEMLLKW VAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALL GAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTTTGDIFEISEVNNHSDCLKLIERNETARWKNV KVNFDNVGFGYLSLLQVATFKGWMDIMYAAVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGV IIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILI CLNMVTMMVETDDQSDYVTSILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFL AELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSN FAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPNKVNPGSSVKGDCGNPSV GIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSQF AAALEPPLNLPQPNKLQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKV SYQPITTTLKRKQEEVSAVIIQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLVKEDMLIDRINENSITE KTDLTMSTAACPPSYDRVTKPIVEKHEQEGKDEKAKGK
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