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Report for CCDS38064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38064.1 Public Mus musculus 2 Il1rn 23 108 98 CCDS HistoryNCBI Gene:16181Re-query CCDS DB by CCDS ID:38064.1Re-query CCDS DB by GeneID:16181See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38064.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114482.2 ENSMUSP00000110126.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114482.2Link to Ensembl Protein Viewer:ENSMUSP00000110126.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114482Re-query CCDS DB by Protein ID:ENSMUSP00000110126
Original member Current member NCBI NM_001039701.3 NP_001034790.1 Accepted alive Link to Nucleotide Sequence:NM_001039701.3Link to Protein Sequence:NP_001034790.1Re-query CCDS DB by Nucleotide ID:NM_001039701Re-query CCDS DB by Protein ID:NP_001034790Link to BLAST:NP_001034790.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034790.1 178 P25085-1 178 100% 0 0

Chromosomal Locations for CCDS 38064.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24345453 24345571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24347466 24347554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24348516 24348628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24349415 24349630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGGAAATCTGCTGGGGACCCTACAGTCACCTAATCTCTCTCCTTCTCATCCTTCTGTTTCATTCAGAGG
CAGCCTGCCGCCCTTCTGGGAAAAGACCCTGCAAGATGCAAGCCTTCAGAATCTGGGATACTAACCAGAA
GACCTTTTACCTGAGAAACAACCAGCTCATTGCTGGGTACTTACAAGGACCAAATATCAAACTAGAAGAA
AAGATAGACATGGTGCCTATTGACCTTCATAGTGTGTTCTTGGGCATCCACGGGGGCAAGCTGTGCCTGT
CTTGTGCCAAGTCTGGAGATGATATCAAGCTCCAGCTGGAGGAAGTTAACATCACTGATCTGAGCAAGAA
CAAAGAAGAAGACAAGCGCTTTACCTTCATCCGCTCTGAGAAAGGCCCCACCACCAGCTTTGAGTCAGCT
GCCTGTCCAGGATGGTTCCTCTGCACAACACTAGAGGCTGACCGTCCTGTGAGCCTCACCAACACACCGG
AAGAGCCCCTTATAGTCACGAAGTTCTACTTCCAGGAAGACCAATAG

Translation (178 aa):
MEICWGPYSHLISLLLILLFHSEAACRPSGKRPCKMQAFRIWDTNQKTFYLRNNQLIAGYLQGPNIKLEE
KIDMVPIDLHSVFLGIHGGKLCLSCAKSGDDIKLQLEEVNITDLSKNKEEDKRFTFIRSEKGPTTSFESA
ACPGWFLCTTLEADRPVSLTNTPEEPLIVTKFYFQEDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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