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Report for CCDS37932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37932.1 Public Mus musculus 19 Rorb 23 108 98 CCDS HistoryNCBI Gene:225998Re-query CCDS DB by CCDS ID:37932.1Re-query CCDS DB by GeneID:225998See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37932.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112832.7 ENSMUSP00000108451.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112832.7Link to Ensembl Protein Viewer:ENSMUSP00000108451.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112832Re-query CCDS DB by Protein ID:ENSMUSP00000108451
Original member Current member NCBI NM_001043354.2 NP_001036819.1 Accepted alive Link to Nucleotide Sequence:NM_001043354.2Link to Protein Sequence:NP_001036819.1Re-query CCDS DB by Nucleotide ID:NM_001043354Re-query CCDS DB by Protein ID:NP_001036819Link to BLAST:NP_001036819.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036819.1 459 Q8R1B8-1 459 100% 0 0

Chromosomal Locations for CCDS 37932.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18937880 18938035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18952158 18952270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18955042 18955152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18957227 18957334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18960409 18960541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18962025 18962146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18977581 18977982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18983342 18983483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18988031 18988116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19110552 19110558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGCGAGCACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGAG
TCATCACGTGTGAAGGCTGCAAGGGATTCTTCAGGAGGAGCCAGCAGAACAATGCCTCTTACTCCTGCCC
AAGGCAGAGAAACTGTTTAATTGACAGAACCAACAGGAACCGTTGCCAACACTGCCGCCTGCAGAAGTGT
CTTGCCCTAGGAATGTCAAGAGATGCTGTAAAGTTCGGGAGGATGTCCAAGAAGCAGCGGGACAGCCTGT
ATGCTGAGGTGCAGAAGCATCAGCAAAGGCTGCAGGAGCAGCGGCAGCAGCAGAGTGGGGAGGCGGAGGC
CCTCGCCAGGGTGTACAGCAGCAGCATTAGCAATGGCCTCAGCAACCTGAACACCGAGACCGGCGGCACA
TACGCCAACGGGCACGTCATTGACCTGCCCAAGTCCGAAGGTTATTACAGCATAGATTCCGGTCAGCCGT
CTCCCGATCAGTCAGGACTGGACATGACTGGGATCAAACAGATAAAGCAAGAACCTATCTATGACCTCAC
ATCTGTACCCAACTTGTTTACCTATAGCTCTTTCAACAACGGGCAGTTAGCTCCCGGGATAACAATGTCT
GAGATCGATCGAATTGCACAGAACATCATTAAGTCCCATTTGGAGACATGTCAGTACACCATGGAAGAAC
TCCATCAGCTGGCATGGCAGACCCACACCTACGAGGAAATCAAGGCGTATCAAAGCAAGTCCAGGGAGGC
TCTGTGGCAGCAGTGTGCCATCCAGATCACCCATGCTATCCAGTACGTGGTGGAGTTCGCCAAGCGGATA
ACAGGCTTCATGGAGCTGTGTCAGAACGATCAGATCTTACTTCTGAAGTCAGGTTGCTTGGAAGTGGTTT
TAGTGAGAATGTGTCGTGCCTTCAACCCATTAAACAACACTGTTCTGTTTGAAGGAAAATATGGAGGAAT
GCAAATGTTCAAAGCCTTAGGTTCGGATGACCTAGTGAATGAAGCATTTGACTTTGCGAAGAATCTGTGT
TCCTTGCAGCTGACTGAGGAAGAGATTGCTCTGTTCTCCTCTGCTGTTCTGATATCCCCAGACCGAGCCT
GGCTGATCGAACCAAGAAAAGTCCAGAAGCTTCAGGAAAAGATTTATTTTGCACTGCAACATGTGATTCA
GAAGAACCACCTGGATGATGAGACCCTGGCAAAGTTAATAGCCAAGATACCAACTATCACGGCAGTCTGC
AACTTGCATGGGGAGAAGCTGCAGGTATTTAAGCAGTCTCATCCAGACATAGTGAATACACTGTTTCCTC
CATTGTACAAGGAGCTCTTTAATCCTGACTGTGCTGCGGTCTGCAAATGA

Translation (459 aa):
MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKC
LALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQQQSGEAEALARVYSSSISNGLSNLNTETGGT
YANGHVIDLPKSEGYYSIDSGQPSPDQSGLDMTGIKQIKQEPIYDLTSVPNLFTYSSFNNGQLAPGITMS
EIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRI
TGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSDDLVNEAFDFAKNLC
SLQLTEEEIALFSSAVLISPDRAWLIEPRKVQKLQEKIYFALQHVIQKNHLDDETLAKLIAKIPTITAVC
NLHGEKLQVFKQSHPDIVNTLFPPLYKELFNPDCAAVCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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