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Report for CCDS37526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37526.1 Public Mus musculus 17 Tcp11 23 108 98 CCDS HistoryNCBI Gene:21463Re-query CCDS DB by CCDS ID:37526.1Re-query CCDS DB by GeneID:21463See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042692.12 ENSMUSP00000038590.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042692.12Link to Ensembl Protein Viewer:ENSMUSP00000038590.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000042692Re-query CCDS DB by Protein ID:ENSMUSP00000038590
Original member Current member EBI ENSMUST00000129046.8 ENSMUSP00000116959.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129046.8Link to Ensembl Protein Viewer:ENSMUSP00000116959.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000129046Re-query CCDS DB by Protein ID:ENSMUSP00000116959
Original member NCBI NM_013687.3 NP_038715.2 Updated not alive Link to Nucleotide Sequence:NM_013687.3Link to Protein Sequence:NP_038715.2Re-query CCDS DB by Nucleotide ID:NM_013687Re-query CCDS DB by Protein ID:NP_038715
Current member NCBI NM_013687.4 NP_038715.2 Accepted alive Link to Nucleotide Sequence:NM_013687.4Link to Protein Sequence:NP_038715.2Re-query CCDS DB by Nucleotide ID:NM_013687Re-query CCDS DB by Protein ID:NP_038715Link to BLAST:NP_038715.2

Chromosomal Locations for CCDS 37526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28066936 28067168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28067790 28067953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28069183 28069364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28069458 28069672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28070423 28070559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28071611 28071831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28074652 28074772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28077986 28078058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28079922 28080279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGCCAGACGTGAAAGAGAGGGCGGCCCGGAAGGAGCCCGGCGCGGCAGAGAGCGCCTCCCGTGAATCCC
GCGGGGGAAACACCCGGGAGAGCGCGAGCAGCGCCCAGGGGCACCGATCGTGTAGGTTCAACCGTCGCCC
GAGCACGGCCGCCCTCACCCCAGGGTCCGCGCAGGGGCGCGGGGTAAAGACGGCGCCACGAGGTCCCGTG
GGCCACGGAGGACTGCGGACTGGCCCGACCTCCCGGTGTCCCCAGCCCTCCGCCCGAGCGAAGCTCCCCT
CGGTCACGCGTGGGGCACCGCTTCCGCCATCCCCGGGAAAGGGCCACCTCGGCGGGACCCCGAGCTCGCA
CAGGCTAGGTATGACGGAGAGAGTCCATGACGCTTCCAAGCTTGATTGTCAGTTGGAAGAAAGGAGTTTA
TCTTCAAGCAGCCTGAAAGGCAAGGTCAAGGACACCATGCCCAGCGACTTCTGGGAGCATCTGAATGAGC
AGCTGTCAGCCGTGCCCCCCGACTTCAGCTGTGCTCTTGAGCTTCTGAAGGAGATCAAAGAGATCCTGTT
GTCCCTGCTGCTGCCACGGCAGAGCCGCCTGAAGAATGAGATCGAGGAAGCTCTGGACATGGAGTTCCTC
CAGCAGCAAGCCGACCGCGGAGACCTGAATGTCTCCTACCTCTCCAAGTATATCCTCAACATGATGGTCT
TGTTGTGTGCGCCAATCCGAGACGAGGCTGTGCAGAGACTTGAGAACATTTCAGATCCGGTCCGGCTGCT
GAGGGGGATCTTCCAGGTCTTGGGACAGATGAAAATGGACATGGTGAACTACACCATCCAGAGCCTCCAG
CCCCAGCTTCAGGAACACTCCGTCCAGTTTGAGCGGGCTCAGTTCCAGGAGCGCCTCAACAAAGAGCCCA
GACTCCTCAACCACACCACGAAGTGGCTCACCCAGGCGGCCACACAGCTCATTGCCCCCTCTGCCAGTTC
CTCTGACTTGCAGGACTGCTCCAGCTCGGCCGGCCCATCTCCCAGTGATGTCGCCGTCCCAGAGCCACTC
AGCCCCGCGATGGTGCTGTCTCAAGGATTCCTGAACCTTCTCACCTGGGACCCTGAGAATGAAGAGTTTC
CTGAAACCCTAGTGGCAGACAGACCCCGGCTGCAGGAGCTGGAGTCGCAGCAGAGTCAGCTAACCATCCT
TGCCTCTGTCTTGCTGGTGGCCAGTAGCTTCTCTGACAGTGGTCTGTTTAGCTCACCCCAGTTTGTAGAC
AAGCTGAAACAAATCACGAAGTCCCTGGTGGAGGATTTCAACTCCAGGCCCGAGGAAGTGATGCAGTCAG
TGAGTGAGCAGGTGGTGGAGGAAGTCCACCAGGGTCTCGAGAGCATGGGGTTGGCCGCTCTGAGCAGCGA
GAATACGGCGTCCCTGGTGGGCCAGCTCCAGAACATTGCCAAGAAGGAAAACTGCGTCCGCAGCGTCATT
GACCAGCGTATACACTTGTTCCTCAAGTGCTGCTTTGTCCTGGGTGTGCAGCGATCCCTCTTGGACCTTC
CCGGGGGCCTCACTCTGATCGAAGCTGAGCTGGCGGAACTGGGCCAGAAGTTTGTCAGCCTGACCCATCA
CAACCAGCAGGTGTTTGCCCCGTATTACACCGAGATCTTAAAAACCCTCATCTCCCCAGCCCAGACCCTG
GCCACCAAAGGTGGGTCTCTCTGA

Translation (567 aa):
MPDVKERAARKEPGAAESASRESRGGNTRESASSAQGHRSCRFNRRPSTAALTPGSAQGRGVKTAPRGPV
GHGGLRTGPTSRCPQPSARAKLPSVTRGAPLPPSPGKGHLGGTPSSHRLGMTERVHDASKLDCQLEERSL
SSSSLKGKVKDTMPSDFWEHLNEQLSAVPPDFSCALELLKEIKEILLSLLLPRQSRLKNEIEEALDMEFL
QQQADRGDLNVSYLSKYILNMMVLLCAPIRDEAVQRLENISDPVRLLRGIFQVLGQMKMDMVNYTIQSLQ
PQLQEHSVQFERAQFQERLNKEPRLLNHTTKWLTQAATQLIAPSASSSDLQDCSSSAGPSPSDVAVPEPL
SPAMVLSQGFLNLLTWDPENEEFPETLVADRPRLQELESQQSQLTILASVLLVASSFSDSGLFSSPQFVD
KLKQITKSLVEDFNSRPEEVMQSVSEQVVEEVHQGLESMGLAALSSENTASLVGQLQNIAKKENCVRSVI
DQRIHLFLKCCFVLGVQRSLLDLPGGLTLIEAELAELGQKFVSLTHHNQQVFAPYYTEILKTLISPAQTL
ATKGGSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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