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Report for CCDS37317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37317.1 Public Mus musculus 16 Slc12a8 23 108 98 CCDS HistoryNCBI Gene:171286Re-query CCDS DB by CCDS ID:37317.1Re-query CCDS DB by GeneID:171286See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119173.7 ENSMUSP00000113633.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119173.7Link to Ensembl Protein Viewer:ENSMUSP00000113633.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119173Re-query CCDS DB by Protein ID:ENSMUSP00000113633
Original member Current member NCBI NM_001083902.2 NP_001077371.1 Accepted alive Link to Nucleotide Sequence:NM_001083902.2Link to Protein Sequence:NP_001077371.1Re-query CCDS DB by Nucleotide ID:NM_001083902Re-query CCDS DB by Protein ID:NP_001077371Link to BLAST:NP_001077371.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077371.1 625 Q8VI23-3 625 100% 0 0

Chromosomal Locations for CCDS 37317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 33534909 33535010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33540852 33541043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33550883 33551114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33590252 33590365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33606166 33606253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33608145 33608232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33624554 33625175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33646563 33646660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33649818 33649935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33658197 33658257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33662925 33663087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGTGGGAGCCGGTGCTGTTTGGGACCTGGGATGGTGTGTTCACATCCTGCATGATCAACATTTTTGGCG
TTGTCCTTTTCTTGAGGACCGGCTGGCTGGTGGGAAACACAGGTGTGCTCCTGGGCTTGCTCCTGGTGTC
CTTCGTCGTCCTCGTGGCCCTCATCACCGTGCTGTCGGGCATTGGTGTCGCAGAGCATGGCGGGATCAGC
AGTGGCGGTGTCTACTCCATGATCTCCTCGGTGCTTGGTGGGCAGATGGGAGGCACTGTGGGGCTGCTCT
ATGTATTTGGACAGTGTGTTGCAGGTGCTATGTACATCACCGGCTTTGCGGAGTCCATCTCAGATCTGCT
GGGACTTGGGGACATCTGGGCAGTGCGTGGAATTTCAGTTGCTGTGCTTCTGGCTTTGCTGGGCATCAAC
CTGGCAGGTGTCAAGTGGATTATCCGCCTCCAGCTGCTGCTGCTGCTCCTGCTGGCTGTCTCGACCCTGG
ACTTTGTGGTGGGCTCTTTCACCCACCTGGACCCAGAACATGGCTTTATTGGCTACTCCCCAGAACTGCT
ACAGAGCAACATTCTGCCAGAGTACAGCCCCGGGGAGTCATTCTTCACTGTGTTTGGGGTGTTCTTCCCT
GCAGCTACAGGAGTCATGGCTGGCTTCAACATGGGAGGAGACCTGAGAGACCCTGCTGACAGTGTCCCCT
TAGGCTCCCTAGCAGCTGTTGGCGTCTCGTGGTTTCTCTACATCATCTTTGCCTTCCTGCTTGGTGCCGT
CTGTACCCGAGAGGCCCTCCGCTCTGACTTCCTGATAGCTGAAAAGAAAGGGCCAAATAAAACACCGGTA
GCAGCCATCTGCCTGACCAGCTTGGTGACCATGGCCTTTGTCCTGGTGGGTCAGGTGAATGTTCTGGCGC
CCGTTGTCACCATCAATTTCATGCTGACCTACATCATGGTGGACTACTCTTACTTCGCCCTCTCCATGGC
TCACTGTGGCCTCGCCCCATCTCCTGAGCCCGTCCCCAGACAAGGCCCAGATACTCTGCACTGCTCTGAG
CACCTGCTCCAGGACAGGGCTCCCAGCTACGGCTCTGATGTCCCTGCCAGAAGCCTCTCTGAGGGCACCC
TGCTGGAGTTCACCAAGGACATGGATCAGTTCCTCCAGCCAATAGAGGAACTGGAGAGTCGTCAGCTTGG
GTCAAGAGAAGGAAACAACCCAAAGAATCAGAAGCGCAAGGGTAAGAAAGGCGCCAAGCAAACCCTACAA
GATAGCTTCCTCTTGGACCCTGGGTCTCCTTTGTCCTTTCCTACGAGGACTTCTGAGAGGTTGTCTGTTG
CCTTCTGTGGGGAGCAAGAGTCCTATCAGAAGCAGCAGACTTCTAGGAGTGAATCACATGACCATCTTGT
TCCTGATCTACGCAACCAGCCTAGAGTGAACAGAGAAGATTTCTTTCTGAAATGCAGACTTCAGGAACAA
GAGATCCAGAGAAGACCAAGTGTTTTCTATGCTTGCATGTGTAACCCCTGGGTCTCCCTGTTAGGGGCTC
TTGCATCCCTGCTCATCATGTTTGTGATCCAGTGGCTCTATACCCTAGCTAGTATGGGTGTTGCTGCCCT
TGTGTATTTCTACATTGGCCAGGCAAGTCCAGGCCTTTACCTCGGATCAGCATCAAACTTCAGCTTTTTC
CAATGGATGAAGTCCTTCTTGGTCCCCTCCTGCAGGAGCCTGAGGTCCGCCCAGGAGCAAATCATCTTGG
CGCCATCACCAGCCAAGGTTGACATGGCAATGACTCAGCTTACCCAGGACAATGCAGACTTCGCCACCCG
AGATCGTTACCACCACTCCTCCTTCCTGAGCCGGGAGCAGTTGATGCCTCCCTACTAG

Translation (625 aa):
MWEPVLFGTWDGVFTSCMINIFGVVLFLRTGWLVGNTGVLLGLLLVSFVVLVALITVLSGIGVAEHGGIS
SGGVYSMISSVLGGQMGGTVGLLYVFGQCVAGAMYITGFAESISDLLGLGDIWAVRGISVAVLLALLGIN
LAGVKWIIRLQLLLLLLLAVSTLDFVVGSFTHLDPEHGFIGYSPELLQSNILPEYSPGESFFTVFGVFFP
AATGVMAGFNMGGDLRDPADSVPLGSLAAVGVSWFLYIIFAFLLGAVCTREALRSDFLIAEKKGPNKTPV
AAICLTSLVTMAFVLVGQVNVLAPVVTINFMLTYIMVDYSYFALSMAHCGLAPSPEPVPRQGPDTLHCSE
HLLQDRAPSYGSDVPARSLSEGTLLEFTKDMDQFLQPIEELESRQLGSREGNNPKNQKRKGKKGAKQTLQ
DSFLLDPGSPLSFPTRTSERLSVAFCGEQESYQKQQTSRSESHDHLVPDLRNQPRVNREDFFLKCRLQEQ
EIQRRPSVFYACMCNPWVSLLGALASLLIMFVIQWLYTLASMGVAALVYFYIGQASPGLYLGSASNFSFF
QWMKSFLVPSCRSLRSAQEQIILAPSPAKVDMAMTQLTQDNADFATRDRYHHSSFLSREQLMPPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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