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Report for CCDS36700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36700.1 Public Mus musculus 13 Fancc 23 108 98 CCDS HistoryNCBI Gene:14088Re-query CCDS DB by CCDS ID:36700.1Re-query CCDS DB by GeneID:14088See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36700.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073029.12 ENSMUSP00000072788.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073029.12Link to Ensembl Protein Viewer:ENSMUSP00000072788.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000073029Re-query CCDS DB by Protein ID:ENSMUSP00000072788
Original member Current member EBI ENSMUST00000161977.7 ENSMUSP00000123817.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161977.7Link to Ensembl Protein Viewer:ENSMUSP00000123817.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161977Re-query CCDS DB by Protein ID:ENSMUSP00000123817
Original member Current member NCBI NM_001042673.2 NP_001036138.1 Accepted alive Link to Nucleotide Sequence:NM_001042673.2Link to Protein Sequence:NP_001036138.1Re-query CCDS DB by Nucleotide ID:NM_001042673Re-query CCDS DB by Protein ID:NP_001036138Link to BLAST:NP_001036138.1
Original member Current member NCBI NM_007985.3 NP_032011.2 Accepted alive Link to Nucleotide Sequence:NM_007985.3Link to Protein Sequence:NP_032011.2Re-query CCDS DB by Nucleotide ID:NM_007985Re-query CCDS DB by Protein ID:NP_032011Link to BLAST:NP_032011.2

Chromosomal Locations for CCDS 36700.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 63312666 63312803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63317353 63317556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63321867 63322044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63323408 63323489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63325551 63325626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63330521 63330620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63331841 63331893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63340319 63340475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63347420 63347584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63360196 63360260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63361579 63361692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63398083 63398177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63400234 63400318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 63402842 63403006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGCTCAGGAGTCTGCAGACCTTGCTTCTGACTGTCAGTCTTGGCTGCAGAAGCTTTCTGCATGGGAAC
AGGCCTCTTCTGAGGAAACCCAGAAGGACACTTGTCTTCACTTGTCCGGGTTCCAGGAGTTCCTGAGGCA
GATGTATGAAATCTTGAAGGAGATGGATTCTGATGCAATCCTGGAAAGGTTCCCCACAATTGGTCAACTG
TTGGCAAAAGCTTGTTGGAATCCTCTCATCTTAGCATATGATGAAAGCCAAAAAATTGTAATATGGTGCT
TATGTTGTCTGATGAACAAAGAACCTCGGACTTCTGCAGAGTCAGGACTTAACTCGTGGATCCGGGGTTT
GTTATCTCATGTACTTTCTGCATTCAGATTCGACATGAAAGAAGTTTGTCTTTTTACCAAAAGTCTTGGA
TATGAGTCTATTGATTACTATCCTAGTTTGCTTAAAAATATGGTTTTGTCATTAGTGTCTGAGCTCAGAG
AGAGTCATCTTAATGGACTGAGCACTCAAAGTCGGATGGCTCCTGAGCGCATGATGTCCCTGTCAGAAGT
TTGTGTCCCTCTTGTCACTCTGCCTGATATGGAACCCCTGGTAGAGGCTCTACTCACCTACCATGGACAT
GAGCCCCAGGAAGTCCTGGCTCCTGAGTTCTTCGAAGCTGTAAATGAGGCCTTCTTGTCGGAAAAAATTG
TTCTACCCACGTCCTCTGTGGTCAGCCTCTGGTTTCGGCATCTCCCCAGTCTTGAAAAAGCAACGCTGCA
TCTTTTTGAAAAGCTTTTCTCCAGCAAGATAATTTGCCTGAGAAGGATGGAGTGCTGTATAAGAGAGTCA
TTCCTGCCTCAAGCAGCCTGCCAACCTGCCATCTTCAGAATTGTTGATGAAATGTTCAGGTTTGTGCTGC
TGGAAACTGACGGAGCCCCAGAAGTACTAGCTGCTCTTCAGGTTTTCACATCGTGCTTGGTAGAAGCTCT
GAAAAAAGAAAACAAGCAGCTGACGTTTGCCCTCAGGACCTACTTTCCTTACGGTGCTCCATGTCTTGCT
GCAGCGCTGTCCCAGCACCCTGAAGCAATCCCACAGGGACACCGGCTCCAGCCTCTGCTGCACATTTCCC
AACTCCTCAGAGAAGCAGTTGAAGACTGTACTCGTGGGTCTCCGCGAAATCCCTTTGAGAGCTGGTTTTT
GTTTGTTCACTTTGGAGGATGGGTTGACCTGGCTGTGGCAGAGTTACTGCTGAGGGAGGAAGCTGAGCCT
CCTGCTGGCCTGCTGTGGCTCTTGGTGTTCTATTACAGCCCACAGGATGGGAGTCAGCAGAGAGAGCAGA
GCATGGTGGAGCTGAAGGTATTAATCAACCGTCTCCTGATGCTGCTCAGAAGCGGCCCCCTCTCAGCTAC
TGATCTGCAGGAAGCAGCTGAGAGTCCCAGTGGAGACCCCAGACCACCTGTATGTGGACAGCTGGTCAGA
CGCCTTCTTCTTAGTCTCTTGCTCTGGACCCCAGAAGGCCATGCAATTGTCTGGGAAGCTGTCACCCATA
TGGCCCACACGGATGCTGTAATCCATGAGATTATTGGTTTTCTTGACCAGACCTTGTACAGATCACAACA
TCTTTGTGTTGAAGCCTCGAGAAAACTGGCCAGAGACCTCCTAAAGGAGCTGCAAGCCCAGGTCTAG

Translation (558 aa):
MAQESADLASDCQSWLQKLSAWEQASSEETQKDTCLHLSGFQEFLRQMYEILKEMDSDAILERFPTIGQL
LAKACWNPLILAYDESQKIVIWCLCCLMNKEPRTSAESGLNSWIRGLLSHVLSAFRFDMKEVCLFTKSLG
YESIDYYPSLLKNMVLSLVSELRESHLNGLSTQSRMAPERMMSLSEVCVPLVTLPDMEPLVEALLTYHGH
EPQEVLAPEFFEAVNEAFLSEKIVLPTSSVVSLWFRHLPSLEKATLHLFEKLFSSKIICLRRMECCIRES
FLPQAACQPAIFRIVDEMFRFVLLETDGAPEVLAALQVFTSCLVEALKKENKQLTFALRTYFPYGAPCLA
AALSQHPEAIPQGHRLQPLLHISQLLREAVEDCTRGSPRNPFESWFLFVHFGGWVDLAVAELLLREEAEP
PAGLLWLLVFYYSPQDGSQQREQSMVELKVLINRLLMLLRSGPLSATDLQEAAESPSGDPRPPVCGQLVR
RLLLSLLLWTPEGHAIVWEAVTHMAHTDAVIHEIIGFLDQTLYRSQHLCVEASRKLARDLLKELQAQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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