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Report for CCDS36592.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36592.1 Public Mus musculus 13 Lgals8 23 108 98 CCDS HistoryNCBI Gene:56048Re-query CCDS DB by CCDS ID:36592.1Re-query CCDS DB by GeneID:56048See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36592.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099820.9 ENSMUSP00000097408.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099820.9Link to Ensembl Protein Viewer:ENSMUSP00000097408.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099820Re-query CCDS DB by Protein ID:ENSMUSP00000097408
Original member Current member EBI ENSMUST00000099821.9 ENSMUSP00000097409.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099821.9Link to Ensembl Protein Viewer:ENSMUSP00000097409.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099821Re-query CCDS DB by Protein ID:ENSMUSP00000097409
Original member Current member EBI ENSMUST00000124888.7 ENSMUSP00000115094.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124888.7Link to Ensembl Protein Viewer:ENSMUSP00000115094.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124888Re-query CCDS DB by Protein ID:ENSMUSP00000115094
Original member Current member NCBI NM_001199043.1 NP_001185972.1 Accepted alive Link to Nucleotide Sequence:NM_001199043.1Link to Protein Sequence:NP_001185972.1Re-query CCDS DB by Nucleotide ID:NM_001199043Re-query CCDS DB by Protein ID:NP_001185972Link to BLAST:NP_001185972.1
Original member Current member NCBI NM_018886.5 NP_061374.1 Accepted alive Link to Nucleotide Sequence:NM_018886.5Link to Protein Sequence:NP_061374.1Re-query CCDS DB by Nucleotide ID:NM_018886Re-query CCDS DB by Protein ID:NP_061374Link to BLAST:NP_061374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185972.1 316 Q9JL15 316 100% 0 0
NP_061374.1 316 Q9JL15 316 100% 0 0

Chromosomal Locations for CCDS 36592.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 12440845 12440994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12447147 12447312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12448419 12448507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12451401 12451427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12452722 12452778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12453285 12453404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12454735 12454945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12456344 12456432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12459174 12459215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGTTGTCCTTAAATAACCTACAAAATATCATCTATAACCCGATAATCCCCTATGTTGGCACCATTACTG
AGCAATTGAAGCCTGGCTCTCTGATTGTAATCCGTGGGCATGTCCCTAAAGATTCAGAAAGATTCCAGGT
TGACTTTCAGCTGGGCAACAGCCTGAAGCCAAGAGCAGACGTGGCCTTCCACTTTAACCCTCGGTTCAAA
AGGTCTAGCTGCATTGTTTGTAACACACTGACACAGGAGAAGTGGGGCTGGGAGGAGATCACCTACGACA
TGCCCTTCAGAAAAGAAAAGTCCTTTGAGATCGTGTTCATGGTGCTCAAGAACAAATTCCAGGTGGCTGT
GAACGGAAGGCATGTTCTGCTGTACGCCCACAGGATCAGCCCGGAGCAGATCGACACAGTGGGCATCTAC
GGCAAAGTGAACATCCACTCCATCGGGTTCAGATTCAGCTCGGATTTACAGAGTATGGAAACATCTGCTC
TGGGACTGACACAGATAAACAGAGAGAATATACAAAAGCCAGGCAAGCTCCAGCTGAGCCTGCCATTTGA
AGCAAGGTTGAATGCCTCCATGGGTCCTGGACGAACCGTTGTCATTAAAGGGGAAGTGAACACCAATGCC
CGAAGCTTTAATGTTGACCTAGTGGCAGGAAAAACAAGGGATATCGCTCTGCACTTGAACCCACGCCTCA
ATGTGAAAGCATTTGTAAGAAATTCCTTTCTTCAGGATGCCTGGGGAGAAGAGGAGAGAAATATTACCTG
CTTCCCATTTAGTTCTGGGATGTACTTTGAGATGATAATCTACTGTGATGTCCGGGAATTCAAGGTTGCT
ATAAATGGTGTGCACAGCCTGGAGTACAAACACAGATTTAAAGACCTAAGCAGTATTGATACACTATCAG
TCGATGGTGATATCCGTTTGCTGGATGTAAGGAGCTGGTAG

Translation (316 aa):
MLSLNNLQNIIYNPIIPYVGTITEQLKPGSLIVIRGHVPKDSERFQVDFQLGNSLKPRADVAFHFNPRFK
RSSCIVCNTLTQEKWGWEEITYDMPFRKEKSFEIVFMVLKNKFQVAVNGRHVLLYAHRISPEQIDTVGIY
GKVNIHSIGFRFSSDLQSMETSALGLTQINRENIQKPGKLQLSLPFEARLNASMGPGRTVVIKGEVNTNA
RSFNVDLVAGKTRDIALHLNPRLNVKAFVRNSFLQDAWGEEERNITCFPFSSGMYFEMIIYCDVREFKVA
INGVHSLEYKHRFKDLSSIDTLSVDGDIRLLDVRSW


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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