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Report for CCDS36472.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36472.2 Public Mus musculus 12 Lrrc9 23 108 98 CCDS HistoryNCBI Gene:78257Re-query CCDS DB by CCDS ID:36472.2Re-query CCDS DB by GeneID:78257See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 36472.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 36472.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161284.2 ENSMUSP00000124602.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161284.2Link to Ensembl Protein Viewer:ENSMUSP00000124602.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161284Re-query CCDS DB by Protein ID:ENSMUSP00000124602
Original member Current member NCBI NM_030070.3 NP_084346.2 Accepted alive Link to Nucleotide Sequence:NM_030070.3Link to Protein Sequence:NP_084346.2Re-query CCDS DB by Nucleotide ID:NM_030070Re-query CCDS DB by Protein ID:NP_084346Link to BLAST:NP_084346.2

Chromosomal Locations for CCDS 36472.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 72449353 72449400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72449648 72449866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72450677 72450817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72451225 72451288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72451963 72452033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72454045 72454227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72455983 72456138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72459833 72460014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72460791 72460922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72463325 72463501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72463833 72463950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72466858 72466990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72469169 72469291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72470223 72470326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72473797 72474009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72476043 72476162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72477203 72477394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72478656 72478781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72481428 72481562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72482894 72483071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72486171 72486391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72486995 72487117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72495565 72495695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72497049 72497226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3468 nt):
ATGATTGAAAGTGAAAACCTAAATCGAGGTGAAATCATTAAAGAACTGTGTCTGTGCAATGGCTTAACTT
ATGAGATCGTTGGACAGGAAGGATCAGATACTTCAAAACTGGAGATGTTTTTCTCAGGGTATCCCCGAAT
AGTTGGATTATCATTGTTTCATAATTTATCAAGTCTTACAATTGTTGCTCAAGATATAAGGGAAATTTCA
GGGTTGGAGACTTGCTTACAGCTTAAAGAACTTTGGATTGCTGAATGCTGCATAGAGAAAATTGAAGGCC
TTCAAGGATGTAGAAATTTGGAAAAATTATATTTATATTACAATAAAATTTCCAAAATAGAAAATTTAGA
GAAGTTAATAAAATTGGAAGTTCTGTGGCTGAACCACAATATGATAAAAAATATTGAGGGCTTGCAGACT
TTGAAGAATCTAAAAGACCTCAACCTTGCAGGAAACTTAGTCAGCAGCATTGGTCGATGTCTTGATCCCA
ATGAACAACTGGAAAAACTAAACCTTTCTGGAAATCAAATTACTTCCTTCAAGGACCTTACTAACTTGAC
CAAGCTCACTCGCTTAAAGGACTTGTGTCTGAACGACCCTCAGTATAAGTCCAACCCCGTGTGTCAGCTG
TGTAACTATTCCACCCACGTGCTCTACCACTTGCCGTCTCTCCAACGACTCGACACGTTTGACGTATCAG
CAAAGCAAATCAAGGAGCTGGCGGATTCCACAGCAATGAAAAAAATAATGTATTATAACATGCGAATAAA
AACTGTTCAGAGACATCTGAATGAAGAACTTGAAAAACTAAATGACAGAAAATGCAAGTTACAGAAGCTA
CCCGAAGAACGGATAAAATTATTCAACTTTGCAAAGAAAACGTTAGAACGGGAACTGGCTGAACTCAAGA
TCTCTAGCAAAGGGCAGAGCGATACAACGCCGGAGGCCGAGAAACCCCGGAATAGTGAGGTTGTCACACA
GGAATCAGTTCTGCAGCAGAAGATACTGACCAAGCTGAGCGCTCTGGATGACAGAGTTACATTCTGGAAC
AAGAAACTGCATGAGATTGAAGCGATTTATCGGACTGAAGTAAAACAGAAGAAGAAGACTCACGGCTTAC
TGACCCCGTTTCTGCTAACTGAGCTGGAGACTGTGGGCAATATCCATTTTGAAGAAGGCACTCAGGCTGA
TGACTGGTTTAACTCCTGCTGTGAACTAATCCTGTCGCGTTTCTGCACCTGGGACTTCAGAGCGTACGGC
ATCACGGGGGTGAAGGTGAAGCGGGTCATTAAAGTCAACAACCGTATTCTGAGGCTGAAGTTTGAAGAGA
AATTCCAAAAGTGTTTGGATCTTGAAGACACACAAGATCCGGAGAGTTACCGGAAGATGCTGGAGTGCCT
TTTCTACGTCTTTGATCCCGAAGTGACTGTAAAGAAGAAGCATCTGCTACAGATACTTGAAAGGGGATTC
AAAGACAGCGACACAAGCAAGCCCTCTCTCAAAAAGGAAGCCGTCACTCTTGTGAACAGCCTCAGTATGT
GTGAGTGTCCCCGGATAGAGTTCCTCCAGCAGAAATACAAGGAGGAGAAGAAAGGCCCCTCAGAGAGTGA
ACTCTACAGACATGGCACCATCCTCATTGCGAAGGTTTTTCTTGGCCAGAGTATTCAGGCTCGTGACCAG
GAGCCCATCAATAAAGCCAACTATCCCATGGTTAACTCGGTGTTTGTTCCTCAGAGACATGTGCTAAGAC
AAAGAACTTGCGACTGTGGCTACCGGCAGTACAAATGGTTTGTCTTCGACCATGACCTCGTTTTGCCAGA
GTACATCGTTGAATTTGAGTACACTACAGTGGTCAAAGTTCACTCTTTATTTTCTACATCAAACAACGTT
ATTCTAGAGGAAGGCAAAAAGTATTCTGAAGGATTAGTATTCTCACAGGATTTGAAATTTGATGATGAAG
TTCTGAAGATGGAACCCAGGATTAAGCCCCGCCCAAAACTCATTAGTTTGGATGAGAAGACTATAATTTC
CCTTGCTAAGACTAATATTTACAGCCATATTGTGAATCTGAATCTACACGGGAATAGCTTGAGTAAACTG
AGAGATCTTGCCAAGCTAACTGGGCTTCGGAAGCTGAACATTAGCTTCAATGAGTTTACTTGCTTAGATG
ATGTGTACCACTTGTACAACCTTGAGTATTTGGACGCCAGCCATAACCATGTGATAACCCTAGAGGGATT
CAGAGGCCTGATGAAACTGAAGCATTTGGACTTGAGCTGGAACCAGCTGAAGAAGACTGGGGAAGAGATC
AATGTGCTGTGCAAACACACCACCAGCCTTCTCACCCTTGACATTCAGCACAACCCCTGGCAGAAGCCAG
CCACATTGAGGCTGAGTGTTATTGGCAGACTAAAGACTCTTACACACTTAGACGGCCTCGTCATTTCTGA
AGAAGAAACCAGAGCAGCTCTGAAATTCATTAGTGGAACGAAGATTACTCAGCTAACTCTCTTACAGCAT
TCCAGTTCTAAAGAGGAAAGGCCTCGGATGCTCAGTACATGGCCCTCTGCCAAAATCCTGACCCAGATTT
CCAAGCTGGGACCCCACTTTCACCTGACCGGGAACTGGTACTCAAAGATAACTGCCTTAAATTTAGATGG
ACAACATCTCTTTGAAATCACAAATCTAGAAAAATTGGAGAATTTGAAATGGGCATCGTTCAGCAATAAT
AACCTCTCCAAAATGGAAGGCCTTGAGTCCTGTGTCAACCTGGAGGAGCTCACATTAGACGGCAACTGCA
TCTCAAAGATAGAAGGCATCACCAGGCTGACAAAGTTAAGCCGCCTCAGCATGAACAACAACCTTCTCAC
GGGCCTGGAGAAGCACACGTTTGATAACCTGCTTCACCTTCACTCCCTCTCTCTGGAGAACAACAGGATC
ACATCTCTGAGCGCGTTACAGAAGACCTTCACTCTGATCGAGTTGTACATAAGCAACAACTACATAGCTG
TGAACCAGGAGATCTACAACTTAAAGGGTTTATGCAACTTGGTCATTCTAGACATGTATGGAAACATTAT
TATATGGAACCAAGAAAACTACCGGTTCTTTGTAATATTTCATCTTCCAGAACTGAAAGCCTTGGATGGA
GTCTCAATTGAGACATCAGAGACAGAGACTGCAAAAGATTTGTTTGGTGGACGGCTTACCTCTGACATGA
TTGCCGAACGACAAGGACACTCAAACTTTATCCAAATGCAAGAGCTAAACTGGACTTCATCAGCCATCAG
GACCGTGGATCTGATTCCTGTCGACCACTTCAGGAATGTGAGCAACGTGAATCTCCAGAACAACAACCTC
ACCTCGTTCAGCGGCCTCATCTACCTGCCCAACGTGAAGGCACGTGGCTGCAGAGCCATATTTGCCCTCA
AAGACATCAGCACAAGTTTTAATCTTCACTTACATTAA

Translation (1155 aa):
MIESENLNRGEIIKELCLCNGLTYEIVGQEGSDTSKLEMFFSGYPRIVGLSLFHNLSSLTIVAQDIREIS
GLETCLQLKELWIAECCIEKIEGLQGCRNLEKLYLYYNKISKIENLEKLIKLEVLWLNHNMIKNIEGLQT
LKNLKDLNLAGNLVSSIGRCLDPNEQLEKLNLSGNQITSFKDLTNLTKLTRLKDLCLNDPQYKSNPVCQL
CNYSTHVLYHLPSLQRLDTFDVSAKQIKELADSTAMKKIMYYNMRIKTVQRHLNEELEKLNDRKCKLQKL
PEERIKLFNFAKKTLERELAELKISSKGQSDTTPEAEKPRNSEVVTQESVLQQKILTKLSALDDRVTFWN
KKLHEIEAIYRTEVKQKKKTHGLLTPFLLTELETVGNIHFEEGTQADDWFNSCCELILSRFCTWDFRAYG
ITGVKVKRVIKVNNRILRLKFEEKFQKCLDLEDTQDPESYRKMLECLFYVFDPEVTVKKKHLLQILERGF
KDSDTSKPSLKKEAVTLVNSLSMCECPRIEFLQQKYKEEKKGPSESELYRHGTILIAKVFLGQSIQARDQ
EPINKANYPMVNSVFVPQRHVLRQRTCDCGYRQYKWFVFDHDLVLPEYIVEFEYTTVVKVHSLFSTSNNV
ILEEGKKYSEGLVFSQDLKFDDEVLKMEPRIKPRPKLISLDEKTIISLAKTNIYSHIVNLNLHGNSLSKL
RDLAKLTGLRKLNISFNEFTCLDDVYHLYNLEYLDASHNHVITLEGFRGLMKLKHLDLSWNQLKKTGEEI
NVLCKHTTSLLTLDIQHNPWQKPATLRLSVIGRLKTLTHLDGLVISEEETRAALKFISGTKITQLTLLQH
SSSKEERPRMLSTWPSAKILTQISKLGPHFHLTGNWYSKITALNLDGQHLFEITNLEKLENLKWASFSNN
NLSKMEGLESCVNLEELTLDGNCISKIEGITRLTKLSRLSMNNNLLTGLEKHTFDNLLHLHSLSLENNRI
TSLSALQKTFTLIELYISNNYIAVNQEIYNLKGLCNLVILDMYGNIIIWNQENYRFFVIFHLPELKALDG
VSIETSETETAKDLFGGRLTSDMIAERQGHSNFIQMQELNWTSSAIRTVDLIPVDHFRNVSNVNLQNNNL
TSFSGLIYLPNVKARGCRAIFALKDISTSFNLHLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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