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Report for CCDS36014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36014.1 Public Mus musculus 10 Hcfc2 23 108 98 CCDS HistoryNCBI Gene:67933Re-query CCDS DB by CCDS ID:36014.1Re-query CCDS DB by GeneID:67933See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 36014.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020478.13 ENSMUSP00000020478.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020478.13Link to Ensembl Protein Viewer:ENSMUSP00000020478.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020478Re-query CCDS DB by Protein ID:ENSMUSP00000020478
Original member Current member NCBI NM_001081218.1 NP_001074687.1 Accepted alive Link to Nucleotide Sequence:NM_001081218.1Link to Protein Sequence:NP_001074687.1Re-query CCDS DB by Nucleotide ID:NM_001081218Re-query CCDS DB by Protein ID:NP_001074687Link to BLAST:NP_001074687.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074687.1 722 Q9D968 722 100% 0 0

Chromosomal Locations for CCDS 36014.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 82699144 82699306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82700919 82701067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82702443 82702603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82709009 82709217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82709964 82710048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82711835 82711941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82712050 82712238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82723619 82723786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82724344 82724396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82728253 82728427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82732603 82732676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82734350 82734481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82738279 82738464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82738980 82739265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82741281 82741312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGGCGGCTCCCAGCCTCCTCAACTGGAGGCGGGTTTCCTCCTTTACCGGACCGGTGCCTCGCGCCCGGC
ACGGACACCGAGCCGTGGCCATCCGGGAGCTGATGATCATCTTCGGCGGGGGCAACGAGGGCATCGCGGA
CGAGCTGCACGTCTACAATACCGTTACAAACCAGTGGTTCCTACCAGCTGTTAGAGGAGACATCCCTCCA
GGCTGTGCAGCCCATGGATTTGTCTGTGATGGGACTAGAATCCTAGTGTTTGGGGGAATGGTTGAATATG
GAAGATACAGCAATGAGTTATATGAGTTACAAGCAAGTCGTTGGTTATGGAAAAAAGTGAAACCCCAGCC
CCCTCCTTCTGGTTTCCCTCCTTGTCCGCGGCTTGGACATAGCTTCTCTTTATATGGTAACAAATGCTAT
TTGTTTGGTGGTTTGGCAAATGAAAGTGAAGATTCAAATAATAATGTCCCCAGGTATTTAAATGATTTCT
ATGAGTTGGAGCTACAGCATGGTTCTGGTGTTGTGGGCTGGAGCATCCCAGCCACCAAAGGCGTTGTGCC
TTCTCCAAGAGAATCCCATACTGCTATTATCTATTGTAAAAAAGACTCTGCGAGTCCTAAGATGTATGTT
TTTGGTGGAATGTGCGGTGCTCGTCTGGATGACCTATGGCAGCTTGATTTAGAAACTATGTCATGGTCCA
AACCAGAAACTAAAGGGACAGTGCCACTTCCACGAAGCCTTCATACAGCCAGTGTTATAGGAAACAAGAT
GTACATTTTTGGTGGATGGGTTCCACATAAAGGTGAAAATCCTGAGACTTCCCCCCATGACTGTGAGTGG
AGATGCACCAGCTCGTTTTCTTACCTAAACCTCGATACAGCAGAGTGGACTACTCTAGTATCAGATTCTC
AGGAAGATAAAAAAAATTCAAGGCCAAGACCAAGAGCAGGACACTGCGCTGTTGCAATTGGCACTCGACT
ATACTTTTGGAGTGGAAGAGATGGCTACAAAAAAGCACTAAATAGTCAGGTCTGCTGCAAGGACCTTTGG
TATCTTGATACTGAGAAACCTCCAGCACCATCACAAGTGCAGTTAATCAAAGCTACTACCAACTCTTTCC
ATGTCAAGTGGGATGAAGTGCCGACGGTTGAGGGCTATCTTTTGCAGTTGAATACTGACCTGACGTACCA
AGCTACATCGTCTGACTCTTCAGCAGCGCCAAGTGTGCTAGGAGGCAGGATGGACCCTCACAGACAAGGC
AGTAATAGCACCCTTCATAACAGTGTTAGTGATACAGTAAACAGTACAAAAACTGAACACACGGCTGTGA
GAGGAACTTCACTGAGAAGCAAGCCTGACTCGAGAGCAGTTGACTCGAGTGCCGCTCTGCATTCACCATT
GGCACCCAACACTTCCAATAACAGCAGCTGGGTGACGGACATGCTGCGCAAGAATGAAGTTGATGAAATA
TGTGCTCTGCCTGCAACTAAGATCAGCCGTGTAGAGGTGCATGCTGCAGCAACGCCATTTTCTAAAGAGA
CACCTTCAAATCCAGTGGCCATTTTGAAAGCAGAGCAGTGGTGTGATGTGGGAATTTTTAAAAACAACAC
AGCTTTGGTGAGCCAGTTTTATTTGCTACCAAAAGGAAAACAAAGTATGTCAAAGGTAGGAAATGCAGAC
GTGCCTGACTACAGTTTGCTTAAGAAACAGGATCTTGTTCCAGGAACAGTATATAAGTTCAGGGTTGCTG
CGATCAATGGCTGTGGAATAGGCCCTCTCAGTAAAGTCAGTGAATTTAAAACGTGTACTCCTGGTTTCCC
TGGAGCCCCATCTACAGTCCGCATCTCTAAGAATGTTGACGGTATCCACCTTTCCTGGGAGCCTCCAACT
TCACCTTCTGGAAATATTTTGGAATATTCAGCCTACTTGGCTATCCGCACAGCACAGATGCAAGATAATC
CAAGCCAACTTGTATTCATGAGGATCTACTGTGGTCTTAAAACCTCATGTACAGTGACTGCTGGGCAGCT
TGCAAATGCACATATTGATTACACATCCAGACCCGCCATTGTGTTCAGAATATCCGCAAAGAATGAAAAG
GGCTATGGACCAGCCACACAAGTCCGATGGCTTCAAGACCAGGAAAAAGATGTGGGCCCATGGTTCTAA

Translation (722 aa):
MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADELHVYNTVTNQWFLPAVRGDIPP
GCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRWLWKKVKPQPPPSGFPPCPRLGHSFSLYGNKCY
LFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPATKGVVPSPRESHTAIIYCKKDSASPKMYV
FGGMCGARLDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGWVPHKGENPETSPHDCEW
RCTSSFSYLNLDTAEWTTLVSDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGRDGYKKALNSQVCCKDLW
YLDTEKPPAPSQVQLIKATTNSFHVKWDEVPTVEGYLLQLNTDLTYQATSSDSSAAPSVLGGRMDPHRQG
SNSTLHNSVSDTVNSTKTEHTAVRGTSLRSKPDSRAVDSSAALHSPLAPNTSNNSSWVTDMLRKNEVDEI
CALPATKISRVEVHAAATPFSKETPSNPVAILKAEQWCDVGIFKNNTALVSQFYLLPKGKQSMSKVGNAD
VPDYSLLKKQDLVPGTVYKFRVAAINGCGIGPLSKVSEFKTCTPGFPGAPSTVRISKNVDGIHLSWEPPT
SPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEK
GYGPATQVRWLQDQEKDVGPWF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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