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Report for CCDS35753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35753.1 Public Mus musculus 1 Sell 23 108 98 CCDS HistoryNCBI Gene:20343Re-query CCDS DB by CCDS ID:35753.1Re-query CCDS DB by GeneID:20343See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027871.12 ENSMUSP00000027871.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027871.12Link to Ensembl Protein Viewer:ENSMUSP00000027871.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027871Re-query CCDS DB by Protein ID:ENSMUSP00000027871
Original member Current member NCBI NM_011346.2 NP_035476.1 Accepted alive Link to Nucleotide Sequence:NM_011346.2Link to Protein Sequence:NP_035476.1Re-query CCDS DB by Nucleotide ID:NM_011346Re-query CCDS DB by Protein ID:NP_035476Link to BLAST:NP_035476.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035476.1 372 P18337 372 100% 0 0

Chromosomal Locations for CCDS 35753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 164062189 164062191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164063053 164063134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164065302 164065688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164066210 164066317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164066611 164066796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164068873 164069058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164072113 164072241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164076142 164076160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164079678 164079696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGTGTTTCCATGGAGATGTGAGGGTACTTACTGGGGCTCGAGGAACATCCTGAAGCTGTGGGTCTGGA
CACTGCTCTGTTGTGACTTCCTGATACACCATGGAACTCACTGTTGGACTTACCATTATTCTGAAAAGCC
CATGAACTGGGAAAATGCTAGAAAGTTCTGCAAGCAAAATTACACAGATTTAGTCGCCATACAAAACAAG
AGAGAAATTGAGTATTTAGAGAATACATTGCCCAAAAGCCCTTATTACTACTGGATAGGAATCAGGAAAA
TTGGGAAAATGTGGACATGGGTGGGAACCAACAAAACTCTCACTAAAGAAGCAGAGAACTGGGGTGCTGG
GGAGCCCAACAACAAGAAGTCCAAGGAGGACTGTGTGGAGATCTATATCAAGAGGGAACGAGACTCTGGG
AAATGGAACGATGACGCCTGTCACAAACGAAAGGCAGCTCTCTGCTACACAGCCTCTTGCCAGCCAGGGT
CTTGCAATGGCCGTGGAGAATGTGTGGAAACTATCAACAATCACACGTGCATCTGTGATGCAGGGTATTA
CGGGCCCCAGTGTCAGTATGTGGTCCAGTGTGAGCCTTTGGAGGCCCCTGAGTTGGGTACCATGGACTGC
ATCCACCCCTTGGGAAACTTCAGCTTCCAGTCCAAGTGTGCTTTCAACTGTTCTGAGGGAAGAGAGCTAC
TTGGGACTGCAGAAACACAGTGTGGAGCATCTGGAAACTGGTCATCTCCAGAGCCAATCTGCCAAGTGGT
CCAGTGTGAGCCTTTGGAGGCCCCTGAGTTGGGTACCATGGACTGCATCCACCCCTTGGGAAACTTCAGC
TTCCAGTCCAAGTGTGCTTTCAACTGTTCTGAGGGAAGAGAGCTACTTGGGACTGCAGAAACACAGTGTG
GAGCATCTGGAAACTGGTCATCTCCAGAGCCAATCTGCCAAGAGACAAACAGAAGTTTCTCAAAGATCAA
AGAAGGTGACTACAACCCCCTCTTCATTCCTGTAGCCGTCATGGTCACCGCATTCTCGGGGCTGGCATTT
CTCATTTGGCTGGCAAGGCGGTTAAAAAAAGGCAAGAAATCTCAAGAAAGGATGGATGATCCATACTGA

Translation (372 aa):
MVFPWRCEGTYWGSRNILKLWVWTLLCCDFLIHHGTHCWTYHYSEKPMNWENARKFCKQNYTDLVAIQNK
REIEYLENTLPKSPYYYWIGIRKIGKMWTWVGTNKTLTKEAENWGAGEPNNKKSKEDCVEIYIKRERDSG
KWNDDACHKRKAALCYTASCQPGSCNGRGECVETINNHTCICDAGYYGPQCQYVVQCEPLEAPELGTMDC
IHPLGNFSFQSKCAFNCSEGRELLGTAETQCGASGNWSSPEPICQVVQCEPLEAPELGTMDCIHPLGNFS
FQSKCAFNCSEGRELLGTAETQCGASGNWSSPEPICQETNRSFSKIKEGDYNPLFIPVAVMVTAFSGLAF
LIWLARRLKKGKKSQERMDDPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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