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Report for CCDS3569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3569.1 Public Homo sapiens 4 ODAPH 24 110 108 CCDS HistoryNCBI Gene:152816Re-query CCDS DB by CCDS ID:3569.1Re-query CCDS DB by GeneID:152816See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3569.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311623.9 ENSP00000311307.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311623.9Link to Ensembl Protein Viewer:ENSP00000311307.5Re-query CCDS DB by Nucleotide ID:ENST00000311623Re-query CCDS DB by Protein ID:ENSP00000311307
Original member Current member NCBI NM_178497.5 NP_848592.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178497.5Link to Protein Sequence:NP_848592.2Re-query CCDS DB by Nucleotide ID:NM_178497Re-query CCDS DB by Protein ID:NP_848592Link to BLAST:NP_848592.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848592.2 130 Q17RF5-1 130 100% 0 0

Chromosomal Locations for CCDS 3569.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 75556083 75556149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75564114 75564439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGGCTCGCAGACACTGCTTCTCCTACTGGTTACTGGTATGCTGGTTGGTGGTAACTGTGGCAGAAGGAC
AAGAAGAGGTATTTACGCCTCCTGGAGATTCACAAAATAATGCGGACGCTACCGACTGCCAGATCTTTAC
ACTCACCCCTCCACCTGCCCCGAGGAGTCCGGTCACAAGGGCCCAGCCCATCACAAAGACACCCAGGTGT
CCCTTCCATTTTTTTCCACGAAGGCCCAGAATCCATTTTAGGTTTCCAAACAGACCTTTCGTCCCTTCAA
GGTGTAACCACCGTTTTCCATTCCAGCCATTTTATTGGCCACACCGTTACCTTACTTATAGGTATTTCCC
CAGAAGAAGACTCCAGAGAGGAAGCTCATCTGAGGAAAGCTGA

Translation (130 aa):
MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTRAQPITKTPRC
PFHFFPRRPRIHFRFPNRPFVPSRCNHRFPFQPFYWPHRYLTYRYFPRRRLQRGSSSEES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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