NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35656.1 Public Mus musculus 1 Sag 23 108 98 CCDS HistoryNCBI Gene:20215Re-query CCDS DB by CCDS ID:35656.1Re-query CCDS DB by GeneID:20215See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077772.11 ENSMUSP00000076948.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077772.11Link to Ensembl Protein Viewer:ENSMUSP00000076948.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077772Re-query CCDS DB by Protein ID:ENSMUSP00000076948
Original member Current member NCBI NM_009118.2 NP_033144.1 Accepted alive Link to Nucleotide Sequence:NM_009118.2Link to Protein Sequence:NP_033144.1Re-query CCDS DB by Nucleotide ID:NM_009118Re-query CCDS DB by Protein ID:NP_033144Link to BLAST:NP_033144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033144.1 403 P20443 403 100% 0 0

Chromosomal Locations for CCDS 35656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87805312 87805377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87810307 87810367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87812985 87813029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87814680 87814873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87817516 87817575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87821307 87821383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87823317 87823452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87824426 87824510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87828397 87828469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87831839 87831976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87834550 87834627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87837310 87837333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87840792 87840847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87844112 87844121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87844915 87845023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGCAGCCTGCGGGAAGACCAATAAATCCCACGTCATCTTCAAGAAGGTCTCTCGGGACAAGTCGGTGA
CCATCTACCTGGGGAAGAGAGACTATGTAGACCACGTCAGCCAAGTAGAGCCTGTAGATGGTGTTGTGCT
GGTGGACCCTGAGCTTGTGAAGGGGAAGAAGGTGTATGTCACCCTGACCTGCGCCTTCCGCTATGGCCAG
GAGGACATTGATGTGATGGGCCTGACCTTCCGCAGGGACCTGTATTTTTCTCGGGTCCAGGTATACCCTC
CTGTTGGGGCCATGAGTGTCCTCACCCAACTCCAAGAGAGCCTGCTCAAGAAACTGGGAGACAACACGTA
CCCCTTTCTGCTCACGTTTCCTGACTACCTACCCTGTTCAGTGATGTTGCAGCCAGCTCCCCAGGATGTA
GGCAAGAGCTGTGGGGTTGACTTTGAGGTTAAAGCATTTGCCTCAGACATCACAGATCCTGAGGAGGACA
AGATCCCCAAGAAGAGCTCTGTGCGGTTACTGATCCGGAAAGTGCAGCATGCCCCACCTGAGATGGGTCC
CCAGCCCAGTGCTGAAGCCTCCTGGCAGTTCTTCATGTCTGACAAGCCCCTGAACCTCTCAGTCTCCCTC
AGCAAAGAGATATATTTCCATGGGGAGCCCATCCCCGTGACTGTGACCGTGACCAACAACACCGACAAGG
TTGTGAAGAAGATTAAAGTATCAGTGGAACAGATAGCCAATGTGGTTCTCTACTCAAGTGACTATTACGT
CAAGCCTGTAGCCTCGGAGGAAACACAAGAAAAAGTGCAGCCAAACAGCACTTTGACCAAGACACTGGTG
CTGGTGCCCCTACTGGCTAACAACAGAGAAAGAAGAGGCATCGCGCTGGATGGGAAGATCAAGCATGAGG
ACACAAACCTGGCCTCCAGCACCATCATCAAGGAGGGCATCGACCGGACCGTCATGGGGATCCTGGTGTC
ATACCATATCAAGGTGAAGCTCACGGTGTCGGGCTTTCTAGGAGAGCTCACATCCAGTGAAGTGGCTACC
GAGGTGCCGTTCCGCCTCATGCACCCGCAGCCTGAGGATCCAGCAAAAGAAAGTGTTCAGGATGAAAATT
TGGTTTTTGAAGAGTTTGCTCGCCAAAATCTGAAAGATACTGGAGAGAACACAGAAGGGAAGAAAGATGA
GGATGCTGGCCAGGATGAGTGA

Translation (403 aa):
MAACGKTNKSHVIFKKVSRDKSVTIYLGKRDYVDHVSQVEPVDGVVLVDPELVKGKKVYVTLTCAFRYGQ
EDIDVMGLTFRRDLYFSRVQVYPPVGAMSVLTQLQESLLKKLGDNTYPFLLTFPDYLPCSVMLQPAPQDV
GKSCGVDFEVKAFASDITDPEEDKIPKKSSVRLLIRKVQHAPPEMGPQPSAEASWQFFMSDKPLNLSVSL
SKEIYFHGEPIPVTVTVTNNTDKVVKKIKVSVEQIANVVLYSSDYYVKPVASEETQEKVQPNSTLTKTLV
LVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDRTVMGILVSYHIKVKLTVSGFLGELTSSEVAT
EVPFRLMHPQPEDPAKESVQDENLVFEEFARQNLKDTGENTEGKKDEDAGQDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH