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Report for CCDS35487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35487.1 Public Homo sapiens Y CDY1B 24 110 108 CCDS HistoryNCBI Gene:253175Re-query CCDS DB by CCDS ID:35487.1Re-query CCDS DB by GeneID:253175See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382407.1 ENSP00000371844.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382407.1Link to Ensembl Protein Viewer:ENSP00000371844.1Re-query CCDS DB by Nucleotide ID:ENST00000382407Re-query CCDS DB by Protein ID:ENSP00000371844
Original member Current member NCBI NM_001003894.2 NP_001003894.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001003894.2Link to Protein Sequence:NP_001003894.1Re-query CCDS DB by Nucleotide ID:NM_001003894Re-query CCDS DB by Protein ID:NP_001003894Link to BLAST:NP_001003894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003894.1 540 Q9Y6F8-1 540 100% 0 0

Chromosomal Locations for CCDS 35487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 24046066 24047688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGGCTTCCCAGGAGTTTGAGGTTGAAGCTATTGTTGACAAAAGACAGGATAAAAATGGGAATACACAGT
ATTTGGTTCGGTGGAAAGGTTATGACAAACAGGATGACACTTGGGAACCAGAGCAGCACCTCATGAACTG
TGAAAAATGTGTACATGATTTTAATAGACGACAGACTGAAAAACAGAAAAAACTGACATGGACTACAACC
AGTAGAATTTTTTCAAACAATGCCAGAAGAAGAACTTCCAGATCTACAAAAGCAAACTATTCTAAGAACT
CTCCTAAAACGCCAGTGACTGATAAACACCACAGGTCCAAAAACCGCAAGTTATTTGCTGCCAGCAAGAA
CGTTAGGAGAAAGGCAGCTTCAATTCTCTCCGACACAAAGAATATGGAGATAATAAATTCAACTATTGAG
ACCCTTGCACCTGACAGCCCCTTTGACCACAAAACTGTGAGTGGCTTTCAGAAACTTGAGAAACTGGACC
CTATTGCAGCAGATCAGCAGGACACGGTGGTCTTCAAGGTGACAGAAGGGAAACTCCTCCGGGACCCTTT
GTCACGTCCTGGTGCAGAACAGACTGGAATACAGAACAAGACTCAGATACACCCACTAATGTCGCAGATG
TCTGGCTCAGTTACTGCTTCTATGGCCACAGGTTCAGCTACCCGAAAGGGTATAGTGGTATTAATAGACC
CATTAGCAGCCAATGGGACAACAGACATGCATACCTCAGTTCCAAGAGTGAAAGGTGGGCAAAGAAATAT
TACTGATGACAGCAGAGACCAGCCTTTTATCAAGAAGATGCACTTCACCATAAGGCTAACAGAAAGTGCC
AGCACATACAGAGACATTGTAGTGAAGAAAGAGGATGGATTCACCCAGATAGTGCTATCAACTAGATCGA
CAGAAAAAAATGCACTGAATACAGAAGTAATTAAAGAAATAGTTAATGCTCTGAATAGCGCTGCTGCAGA
TGACAGCAAGCTCGTGCTGTTCAGTGCAGCTGGAAGTGTCTTTTGCTGCGGTCTTGATTTTGGGTACTTT
GTGAAGCACTTAAGGAATAACAGAAACACAGCAAGCCTTGAAATGGTGGACACCATCAAGAACTTTGTGA
ATACTTTTATTCAATTTAAAAAGCCTATTGTTGTATCAGTCAATGGCCCTGCGATTGGACTAGGTGCATC
CATCCTGCCTCTTTGTGATCTCGTGTGGGCTAATGAAAAGGCTTGGTTCCAAACCCCTTATACGACCTTT
GGACAGAGTCCAGATGGCTGTTCTTCTATTACATTCCCCAAAATGATGGGTAAAGCATCTGCCAATGAAA
TGTTAATTGCTGGGCGAAAGCTGACAGCAAGGGAGGCATGCGCCAAAGGCCTGGTCTCTCAGGTATTTTT
GACTGGAACTTTCACCCAAGAGGTTATGATTCAAATTAAGGAGCTTGCCTCATACAATCCAATTGTACTG
GAAGAATGTAAGGCCCTCGTTCGCTGTAATATTAAGTTGGAGTTGGAACAGGCCAATGAGAGAGAGTGTG
AGGTGCTGAGGAAGATCTGGAGCTCAGCCCAAGGGATAGAATCCATGTTAAAGTATGTTGAAAATAAAAT
TGATGAGTTTTAA

Translation (540 aa):
MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQKKLTWTTT
SRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKLFAASKNVRRKAASILSDTKNMEIINSTIE
TLAPDSPFDHKTVSGFQKLEKLDPIAADQQDTVVFKVTEGKLLRDPLSRPGAEQTGIQNKTQIHPLMSQM
SGSVTASMATGSATRKGIVVLIDPLAANGTTDMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESA
STYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYF
VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTF
GQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVL
EECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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