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Report for CCDS35247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35247.1 Public Homo sapiens X SLC35A2 24 110 108 CCDS HistoryNCBI Gene:7355Re-query CCDS DB by CCDS ID:35247.1Re-query CCDS DB by GeneID:7355See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35247.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000445167.7 ENSP00000402726.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445167.7Link to Ensembl Protein Viewer:ENSP00000402726.2Re-query CCDS DB by Nucleotide ID:ENST00000445167Re-query CCDS DB by Protein ID:ENSP00000402726
Original member Current member NCBI NM_001032289.3 NP_001027460.1 Accepted alive Link to Nucleotide Sequence:NM_001032289.3Link to Protein Sequence:NP_001027460.1Re-query CCDS DB by Nucleotide ID:NM_001032289Re-query CCDS DB by Protein ID:NP_001027460Link to BLAST:NP_001027460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001027460.1 242 P78381-3 242 100% 0 0

Chromosomal Locations for CCDS 35247.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48904590 48904892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48906392 48906543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48909814 48909996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48911546 48911636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGCAGCGGTTGGGGCTGGTGGTTCCACCGCGGCGCCCGGGCCAGGGGCGGTTTCCGCGGGTGCATTGG
AGCCGGGGACCGCCAGTGCGGCTCACAGGCGCCTGAAGTACATATCCCTAGCTGTGCTGGTGGTCCAGAA
TGCCTCCCTCATCCTCAGCATCCGCTACGCCCGCACGTTGCCAGGGGACCGCTTCTTTGCCACCACTGCT
GTGGTCATGGCGGAAGTGCTCAAAGGTCTCACCTGCCTGCTGCTGCTCTTCGCACAGAAGAGGGGTAACG
TGAAGCACCTGGTTCTCTTCCTCCATGAGGCTGTCCTGGTGCAGTATGTGGACACGCTCAAGCTCGCAGT
GCCCTCTCTCATCTACACCTTGCAGAATAACCTCCAGTATGTTGCCATCTCTAACCTACCAGCTGCCACT
TTCCAGCCTTCCCCGAGGTGCAGCCAAAGCCATAGCCTCTGCCTCTGCCTCCGCCTCCGGGCCCTGCGTT
CACCAGCAGCCTCCCGGGCAGCCACCACCACCGCAGCTGTCTTCCCACCGTGGAGACCTCATCACGGAGC
CCTTTCTGCCAAAGTCAGTGCTGGTGAAGTGAGGGCTGGCAGCAATGGGGGGACACAAGGGAGGGGGACT
GGGGTGGAGGGTGTTGGGCATCTGCAGGACCCAAGTCGCCACCCTCCGGGGCCTGGCTCCTCTGGGTTTG
GGAGATGGTCTTTTCTCCCAGGTCACTGA

Translation (242 aa):
MAAVGAGGSTAAPGPGAVSAGALEPGTASAAHRRLKYISLAVLVVQNASLILSIRYARTLPGDRFFATTA
VVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYVAISNLPAAT
FQPSPRCSQSHSLCLCLRLRALRSPAASRAATTTAAVFPPWRPHHGALSAKVSAGEVRAGSNGGTQGRGT
GVEGVGHLQDPSRHPPGPGSSGFGRWSFLPGH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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