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Report for CCDS35182.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35182.2 Public Homo sapiens 9 LCN10 24 110 108 CCDS HistoryNCBI Gene:414332Re-query CCDS DB by CCDS ID:35182.2Re-query CCDS DB by GeneID:414332See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35182.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000497771.6 ENSP00000418491.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000497771.6Link to Ensembl Protein Viewer:ENSP00000418491.1Re-query CCDS DB by Nucleotide ID:ENST00000497771Re-query CCDS DB by Protein ID:ENSP00000418491
Original member Current member NCBI NM_001001712.3 NP_001001712.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001712.3Link to Protein Sequence:NP_001001712.2Re-query CCDS DB by Nucleotide ID:NM_001001712Re-query CCDS DB by Protein ID:NP_001001712Link to BLAST:NP_001001712.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001712.2 200 Q6JVE6-2 200 100% 0 0

Chromosomal Locations for CCDS 35182.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 136739525 136739553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136739950 136740048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136740836 136740943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136741252 136741361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136741881 136742020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 136742787 136742903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGAGGCAGGGGCTGCTGGTGCTGGCGCTGGTGCTGGTGCTGGTGCTAGTGCTGGCTGCAGGGTCCCAGG
TGCAGGAGTGGTACCCCAGGGAGTCCCACGCCCTCAACTGGAACAAGTTTTCAGGGTTCTGGTACATTCT
GGCCACTGCCACTGATGCCCAGGGATTCTTGCCGGCCAGGGACAAGAGGAAGCTGGGGGCGTCCGTGGTA
AAGGTGAACAAAGTGGGCCAGCTCCGCGTGCTCCTCGCCTTCAGACGGTTGAAGGGGTGCCAGTCCCAGG
AGGTGATCCTGAGGAAAGACGGGAAGAAGCCGGTGTTTGGGAACGCCTGTGCATACGCGGCGGGCCCGAG
GGAAGGACAGGAGGGAGTGAAAGGGGTGAAGGCCTTCCACGTGCTGTCCACTGACTACAGCTACGGCTTG
GTCTACCTCCGCCTGGGGCGTGCAACCCAAAACTACAAGAACCTGCTGCTCTTCCATAGGCAGAATGTTT
CGAGCTTCCAGAGTCTGAAGGAATTCATGGACGCTTGTGACATTCTGGGGCTCTCCAAGGCCGCCGTCAT
CCTCCCGAAAGACGCGTCCCGTACACACACCATCCTGCCATGA

Translation (200 aa):
MRQGLLVLALVLVLVLVLAAGSQVQEWYPRESHALNWNKFSGFWYILATATDAQGFLPARDKRKLGASVV
KVNKVGQLRVLLAFRRLKGCQSQEVILRKDGKKPVFGNACAYAAGPREGQEGVKGVKAFHVLSTDYSYGL
VYLRLGRATQNYKNLLLFHRQNVSSFQSLKEFMDACDILGLSKAAVILPKDASRTHTILP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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