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Report for CCDS35176.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35176.2 Public Homo sapiens 9 CAMSAP1 24 110 108 CCDS HistoryNCBI Gene:157922Re-query CCDS DB by CCDS ID:35176.2Re-query CCDS DB by GeneID:157922See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 35176.1
The coding region has been updated to represent an alternative splicing pattern and to extend the N-terminus based on available transcript and homology data. The 5' extension to the translation start codon of this update has no direct transcript support in human (14 nts are extended upstream of the 5'-most EST, AW448941.1), but it is supported by transcripts representing the mouse ortholog, and by conservation across several species.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35176.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389532.9 ENSP00000374183.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389532.9Link to Ensembl Protein Viewer:ENSP00000374183.4Re-query CCDS DB by Nucleotide ID:ENST00000389532Re-query CCDS DB by Protein ID:ENSP00000374183
Original member Current member NCBI NM_015447.4 NP_056262.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015447.4Link to Protein Sequence:NP_056262.3Re-query CCDS DB by Nucleotide ID:NM_015447Re-query CCDS DB by Protein ID:NP_056262Link to BLAST:NP_056262.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056262.3 1602 Q5T5Y3-1 1602 100% 0 0

Chromosomal Locations for CCDS 35176.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 135811309 135811611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135815097 135815215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135815890 135816005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135817977 135818079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135818408 135818616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135819010 135819146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135820839 135823260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135823950 135824034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135824789 135824880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135827407 135827584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135850137 135850233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135850322 135850461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135862467 135862608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135866456 135866536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135881633 135881794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135882816 135883078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 135907000 135907159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4809 nt):
ATGGTGGACGCGAGCGGCCGCGCCGCCGCCGAGGGCTGGAGGAAGATGGAGGCCCCGCCGGACGGCGCCG
CCGACCTCGTGCCCCTGGACCGCTACGACGCGGCGCGCGCCAAGATCGCCGCCAACCTGCAGTGGATCTG
CGCCAAGGCCTACGGCCGAGATAACATCCCTGAGGACCTCAGAGACCCTTTCTACGTTGACCAGTATGAG
CAGGAGCACATTAAGCCGCCTGTTATCAAGCTTCTCCTGTCCAGCGAGCTGTACTGCCGTGTCTGCAGCC
TCATCCTGAAAGGGGACCAGGTGGCCGCCTTACAGGGACACCAGTCTGTCATCCAGGCCCTGTCCCGGAA
AGGGATCTATGTGATGGAGAGTGATGACACCCCCGTGACAGAGTCCGACCTCAGTCGCGCACCCATAAAA
ATGAGTGCCCACATGGCAATGGTGGATGCCCTGATGATGGCCTACACTGTGGAGATGATCAGCATCGAGA
AGGTGGTGGCCAGTGTCAAGCGCTTCTCAACGTTCAGTGCCTCGAAAGAACTTCCGTACGACCTCGAGGA
TGCCATGGTGTTCTGGATCAACAAGGTAAATCTTAAAATGAGAGAGATAACAGAGAAAGAAGTTAAATTA
AAACAACAGTTATTGGAAAGTCCAGCTCATCAAAAGGTCCGCTATCGACGAGAGCACCTTTCTGCTAGGC
AGTCACCCTACTTCCCGTTGTTGGAGGATTTGATGAGAGACGGCAGTGATGGTGCTGCTCTCTTAGCTGT
GATTCACTATTATTGCCCAGAGCAGATGAAACTGGATGATATATGCTTAAAGGAGGTAACGTCGATGGCC
GACAGTCTGTATAATATTCGGCTTCTGAGAGAATTCTCCAATGAATATCTTAATAAATGTTTTTATCTCA
CCTTGGAAGATATGCTGTATGCGCCATTAGTGTTGAAGCCGAATGTTATGGTTTTTATTGCGGAGCTTTT
TTGGTGGTTCGAGAATGTCAAGCCAGATTTTGTTCAGCCCAGGGATGTTCAGGAGCTGAAAGACGCGAAA
ACAGTGTTACACCAGAAGAGCAGCCGGCCTCCTGTACCGATCTCCAACGCGACCAAACGCAGTTTCCTAG
GCAGCCCTGCTGCAGGGACCCTGGCTGAGCTGCAGCCCCCCGTGCAGCTGCCGGCGGAAGGCTGTCACAG
GCACTACCTGCACCCGGAAGAACCTGAATACCTCGGGAAAGGAACTGCTGCCTTCAGCCCATCCCATCCT
TTATTGCCACTGAGACAGAAACAGCAGAAATCCATACAGGGAGAGGACATCCCTGATCAGCGACATCGAT
CGAATTCTTTGACCCGAGTTGATGGTCAGCCTCGAGGAGCAGCAATAGCCTGGCCAGAAAAAAAAACCAG
GCCTGCGTCCCAGCCAACACCTTTTGCTCTACATCACGCTGCGAGTTGTGAAGTGGATCCCAGCTCTGGC
GACAGCATCAGCTTGGCCCGCTCCATCAGCAAAGACAGTTTGGCATCCAACATTGTTAATCTGACCCCAC
AGAACCAGCCACACCCCACGGCCACGAAGAGCCACGGGAAGAGCCTCCTGAGCAATGTCAGTATTGAGGA
TGAGGAAGAGGAGCTTGTGGCTATTGTTAGAGCAGACGTGGTTCCCCAGCAGGCTGACCCGGAGTTCCCC
AGGGCCTCACCCCGGGCCTTAGGCCTTACAGCAAATGCCCGGTCTCCCCAAGGACAGCTGGACACCTCGG
AAAGTAAGCCTGACAGTTTTTTCTTGGAGCCTTTGATGCCAGCAGTTCTTAAGCCAGCGAAAGAGAAGCA
GGTGATCACCAAGGAGGATGAACGGGGGGAAGGGAGACCGAGGAGCATCGTGTCTAGGAGGCCCAGCGAG
GGCCCCCAGCCTTTGGTACGAAGGAAAATGACTGGCAGTCGCGACTTGAATAGGACTTTTACCCCGATTC
CATGCTCAGAATTCCCCATGGGCATCGACCCCACCGAGACAGGACCACTGTCAGTGGAAACCGCAGGAGA
GGTCTGTGGTGGGCCTCTGGCCCTTGGCGGATTCGATCCGTTCCCCCAGGGACCATCCACGGATGGCTTC
TTCCTTCATGTAGGCAGGGCCGATGAAGACACCGAGGGAAGGTTATATGTTAGTTGTTCAAAAAGCCCCA
ACTCCCACGATTCAGAGCCGTGGACTCTCCTCAGGCAGGATTCTGACTCGGATGTGGTGGACATAGAGGA
AGCCGAGCACGATTTCATGGGTGAGGCCCATCCTGTGGTTTTCAGCAGATACATTGGGGAGGAAGAGTCG
GCCAAACTGCAGGAGGACATGAAGGTGAAGGAACATGAAGACAAAGATGACGCCAGCGGCCGCTCGAGCC
CCTGCCTGAGCACAGCCTCTCAGATGAGCAGTGTCTCCATGGCGAGTGGGAGCGTGAAGATGACCAGCTT
TGCGGAGAGGAAGCTCCAGAGACTCAACAGCTGTGAGACCAAGTCCAGCACCAGCAGCTCCCAGAAGACC
ACGCCAGATGCGTCTGAGAGCTGCCCAGCCCCTCTGACGACGTGGAGGCAGAAGAGGGAGCAGAGTCCGA
GCCAGCATGGCAAGGATCCCGCCAGCCTCCTGGCATCTGAGCTGGTACAGCTGCACATGCAGCTGGAGGA
GAAGCGCAGGGCCATCGAGGCCCAGAAGAAGAAGATGGAGGCGCTGTCGGCAAGGCAGCGCCTGAAGCTC
GGCAAGGCTGCATTCCTGCATGTGGTGAAGAAGGGCAAGGCCGAGGCTGCCCCACCCCTCAGGCCGGAGC
ACTTTGCAAAGGAGTACTCTCAGCACAACGGGGAGGACTGTGGGGACGCTGTTTCCAAAACCGAAGACTT
TCTCGTGAAGGAGGAGCAGAGAGAGGAGCTCCTTCACGAGCCACAGGATGTGGACAAAGAGAGCCTGGCC
TTTGCTCAGCAACATAAAGCAAAAGACCCTGTGGCTCTGCACGAGCTGGAGAGAAATAAGGTGATCTCCG
CTGCCCTCCTGGAGGACACTGTTGGGGAGGTTGTCGACGTGAATGAATGTGACCTTTCCATCGAGAAGCT
TAACGAAACCATCAGTACGCTGCAGCAGGCCATCCTGAAAATCTCTCAGCAGCAAGAGCAGCTTCTGATG
AAGTCCCCCACAGTCCCAGTGCCAGGCTCTAAGAATAACTCGCAGGACCACAAAGTGAAGGCACCAGTCC
ACTTCGTGGAGCCACTCTCTCCCACGGGCGTGGCTGGCCACCGCAAAGCCCCCCGGCTGGGTCAAGGCCG
GAATTCCCGTTCCGGAAGGCCGGCGGAGCTGAAGGTCCCAAAAGACAGGCCACAGGGCTCCTCCCGAAGT
AAAACCCCAACGCCCAGTGTAGAGACGCTCCCGCACTTGAGACCCTTCCCTGCCAGCAGCCACCCTCGGA
CGCCCACGGACCCTGGCCTGGACAGTGCCCTGGAGCCCAGTGGTGACCCACATGGGAAGTGTCTCTTCGA
CAGTTACAGGCTCCATGATGAAAGCAATCAGCGGACACTTACTCTGTCCTCTTCCAAAGATGCCAACATT
CTTTCGGAGCAGATGAGCCTCAAAGAAGTTCTGGATGCGAGTGTGAAGGAGGTGGGGTCCAGCTCCTCAG
ATGTCTCGGGAAAAGAGAGCGTCCCCGTGGAGGAGCCTCTGAGGAGCAGGGCCAGCCTCATTGAAGTGGA
CCTCTCCGACCTGAAGGCCCCCGACGAGGATGGGGAGCTGGTAAGCCTCGATGGCTCGGCGGACCTTGTC
AGCGAAGGCGACCAGAAGCCGGGGGTCGGCTTCTTCTTCAAGGATGAACAGAAAGCGGAAGATGAGCTCG
CCAAGAAGCGGGCGGCCTTCCTCCTGAAGCAGCAGCGCAAGGCCGAGGAGGCCCGCGTGCGCAAGCAGCA
GCTGGAAGCGGAGGTGGAGCTCAAGCGTGACGAAGCCCGGCGCAAAGCTGAGGAAGACCGGGTGCGGAAG
GAGGAGGAGAAGGCGCGGCGCGAGCTCATCAAGCAGGAGTACCTGCGGAGGAAGCAGCAGCAGATCCTAG
AGGAGCAGGGGCTCGGCAAGCCCAAGTCAAAGCCGAAGAAGCCGCGGCCGAAGTCGGTGCACCGGGAAGA
GTCGTGCAGCGACTCCGGCACCAAGTGCTCCTCCACCCCTGATAACTTGAGCCGGACTCAGTCAGGCTCC
AGCCTGTCCTTGGCCTCTGCGGCGACGACAGAACCCGAGAGCGTTCATTCCGGGGGCACACCCTCTCAGC
GAGTGGAATCGATGGAAGCCCTGCCCATACTGAGCCGTAACCCAAGCAGGAGCACAGACCGAGACTGGGA
GACCGCGTCGGCGGCATCTTCCCTGGCCTCAGTGGCCGAGTACACAGGTCCCAAGCTCTTTAAGGAGCCC
AGTAGTAAATCAAACAAGCCGATTATTCACAATGCCATATCCCATTGCTGCCTGGCTGGAAAAGTGAACG
AACCCCACAAGAATTCCATATTGGAGGAGCTGGAGAAGTGTGATGCCAATCACTACATCATACTGTTTCG
TGATGCTGGCTGCCAGTTCAGGGCGCTTTACTGCTACTATCCTGATACTGAGGAAATCTACAAACTCACT
GGCACGGGGCCAAAGAACATCACCAAGAAAATGATCGACAAACTGTATAAATACAGCTCAGACCGAAAAC
AGTTTAACTTGATCCCAGCCAAAACCATGTCTGTCAGTGTGGACGCACTCACAATCCACAACCACCTGTG
GCAGCCCAAGCGGCCTGCAGTGCCAAAGAAGGCCCAGACTCGTAAATGA

Translation (1602 aa):
MVDASGRAAAEGWRKMEAPPDGAADLVPLDRYDAARAKIAANLQWICAKAYGRDNIPEDLRDPFYVDQYE
QEHIKPPVIKLLLSSELYCRVCSLILKGDQVAALQGHQSVIQALSRKGIYVMESDDTPVTESDLSRAPIK
MSAHMAMVDALMMAYTVEMISIEKVVASVKRFSTFSASKELPYDLEDAMVFWINKVNLKMREITEKEVKL
KQQLLESPAHQKVRYRREHLSARQSPYFPLLEDLMRDGSDGAALLAVIHYYCPEQMKLDDICLKEVTSMA
DSLYNIRLLREFSNEYLNKCFYLTLEDMLYAPLVLKPNVMVFIAELFWWFENVKPDFVQPRDVQELKDAK
TVLHQKSSRPPVPISNATKRSFLGSPAAGTLAELQPPVQLPAEGCHRHYLHPEEPEYLGKGTAAFSPSHP
LLPLRQKQQKSIQGEDIPDQRHRSNSLTRVDGQPRGAAIAWPEKKTRPASQPTPFALHHAASCEVDPSSG
DSISLARSISKDSLASNIVNLTPQNQPHPTATKSHGKSLLSNVSIEDEEEELVAIVRADVVPQQADPEFP
RASPRALGLTANARSPQGQLDTSESKPDSFFLEPLMPAVLKPAKEKQVITKEDERGEGRPRSIVSRRPSE
GPQPLVRRKMTGSRDLNRTFTPIPCSEFPMGIDPTETGPLSVETAGEVCGGPLALGGFDPFPQGPSTDGF
FLHVGRADEDTEGRLYVSCSKSPNSHDSEPWTLLRQDSDSDVVDIEEAEHDFMGEAHPVVFSRYIGEEES
AKLQEDMKVKEHEDKDDASGRSSPCLSTASQMSSVSMASGSVKMTSFAERKLQRLNSCETKSSTSSSQKT
TPDASESCPAPLTTWRQKREQSPSQHGKDPASLLASELVQLHMQLEEKRRAIEAQKKKMEALSARQRLKL
GKAAFLHVVKKGKAEAAPPLRPEHFAKEYSQHNGEDCGDAVSKTEDFLVKEEQREELLHEPQDVDKESLA
FAQQHKAKDPVALHELERNKVISAALLEDTVGEVVDVNECDLSIEKLNETISTLQQAILKISQQQEQLLM
KSPTVPVPGSKNNSQDHKVKAPVHFVEPLSPTGVAGHRKAPRLGQGRNSRSGRPAELKVPKDRPQGSSRS
KTPTPSVETLPHLRPFPASSHPRTPTDPGLDSALEPSGDPHGKCLFDSYRLHDESNQRTLTLSSSKDANI
LSEQMSLKEVLDASVKEVGSSSSDVSGKESVPVEEPLRSRASLIEVDLSDLKAPDEDGELVSLDGSADLV
SEGDQKPGVGFFFKDEQKAEDELAKKRAAFLLKQQRKAEEARVRKQQLEAEVELKRDEARRKAEEDRVRK
EEEKARRELIKQEYLRRKQQQILEEQGLGKPKSKPKKPRPKSVHREESCSDSGTKCSSTPDNLSRTQSGS
SLSLASAATTEPESVHSGGTPSQRVESMEALPILSRNPSRSTDRDWETASAASSLASVAEYTGPKLFKEP
SSKSNKPIIHNAISHCCLAGKVNEPHKNSILEELEKCDANHYIILFRDAGCQFRALYCYYPDTEEIYKLT
GTGPKNITKKMIDKLYKYSSDRKQFNLIPAKTMSVSVDALTIHNHLWQPKRPAVPKKAQTRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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