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Report for CCDS3433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3433.1 Public Homo sapiens 4 PI4K2B 24 110 108 CCDS HistoryNCBI Gene:55300Re-query CCDS DB by CCDS ID:3433.1Re-query CCDS DB by GeneID:55300See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3433.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264864.8 ENSP00000264864.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264864.8Link to Ensembl Protein Viewer:ENSP00000264864.6Re-query CCDS DB by Nucleotide ID:ENST00000264864Re-query CCDS DB by Protein ID:ENSP00000264864
Original member Current member NCBI NM_018323.4 NP_060793.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018323.4Link to Protein Sequence:NP_060793.2Re-query CCDS DB by Nucleotide ID:NM_018323Re-query CCDS DB by Protein ID:NP_060793Link to BLAST:NP_060793.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060793.2 481 Q8TCG2 481 100% 0 0

Chromosomal Locations for CCDS 3433.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 25234164 25234431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25252321 25252475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25255065 25255265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25256543 25256674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25259037 25259190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25260524 25260591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25263750 25263849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25268443 25268576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25269144 25269203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25277014 25277187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGGAGGATCCCTCCGAGCCCGACCGGTTGGCGTCCGCGGACGGCGGGAGCCCGGAGGAGGAGGAGGATG
GGGAGCGGGAGCCGCTGCTACCGCGGATCGCCTGGGCCCACCCGCGGAGAGGCGCCCCAGGCAGCGCCGT
GAGGCTGCTGGACGCTGCCGGGGAGGAGGGCGAGGCCGGCGACGAGGAGCTGCCCCTCCCGCCCGGGGAC
GTGGGGGTCTCCCGGAGTTCGTCCGCCGAGCTGGACCGGAGCCGCCCCGCGGTTTCAGTAACTATTGGTA
CTTCAGAGATGAATGCATTCTTGGATGACCCAGAATTTGCCGATATTATGCTGAGAGCAGAGCAAGCAAT
AGAAGTTGGAATTTTTCCAGAAAGAATCTCTCAAGGTTCAAGTGGAAGTTACTTTGTGAAGGATCCTAAG
AGGAAAATTATTGGTGTGTTTAAACCCAAATCAGAAGAGCCTTATGGTCAACTCAATCCAAAATGGACCA
AATATGTCCATAAGGTCTGCTGCCCTTGCTGCTTTGGCCGAGGCTGCCTGATTCCTAATCAGGGGTACCT
TTCCGAAGCGGGTGCCTATCTTGTGGACAACAAGCTTCATCTGAGCATTGTACCTAAAACAAAGGTGGTT
TGGCTTGTCAGTGAGACATTTAACTATAATGCGATTGACCGTGCAAAATCAAGAGGCAAAAAGTATGCTT
TAGAAAAAGTGCCAAAAGTGGGTAGAAAGTTTCATAGGATAGGACTCCCTCCTAAGATTGGTTCCTTTCA
GTTATTTGTTGAAGGTTACAAGGAGGCTGAATATTGGCTTAGGAAATTTGAAGCTGACCCTTTGCCTGAG
AATATTAGAAAACAATTTCAGTCACAATTTGAAAGATTAGTTATTTTGGATTACATCATCAGAAATACAG
ACAGGGGCAATGATAATTGGTTAGTCAGATACGAAAAGCAGAAATGTGAAAAGGAAATTGACCATAAGGA
ATCAAAATGGATTGATGATGAAGAATTCCTTATTAAAATAGCTGCAATTGATAATGGTCTAGCATTTCCT
TTTAAACATCCTGATGAATGGAGAGCATATCCATTTCACTGGGCTTGGCTTCCTCAAGCAAAAGTTCCCT
TTTCTGAAGAAATAAGAAATTTGATTCTACCATATATTTCTGACATGAACTTTGTGCAAGATTTATGTGA
AGATCTCTATGAACTTTTTAAGACTGACAAAGGATTTGACAAAGCCACTTTTGAAAGTCAGATGTCTGTG
ATGAGGGGTCAGATCTTAAACCTTACTCAGGCATTGAGAGACGGGAAGAGTCCTTTCCAGCTAGTACAGA
TACCTTGTGTGATTGTGGAACGCAGTCAAGGTGGAAGTCAGGGTCGGATTGTCCACCTGAGCAATTCCTT
TACCCAGACTGTCAATTGCAGGAAGCCATTTTTTTCCTCCTGGTAG

Translation (481 aa):
MEDPSEPDRLASADGGSPEEEEDGEREPLLPRIAWAHPRRGAPGSAVRLLDAAGEEGEAGDEELPLPPGD
VGVSRSSSAELDRSRPAVSVTIGTSEMNAFLDDPEFADIMLRAEQAIEVGIFPERISQGSSGSYFVKDPK
RKIIGVFKPKSEEPYGQLNPKWTKYVHKVCCPCCFGRGCLIPNQGYLSEAGAYLVDNKLHLSIVPKTKVV
WLVSETFNYNAIDRAKSRGKKYALEKVPKVGRKFHRIGLPPKIGSFQLFVEGYKEAEYWLRKFEADPLPE
NIRKQFQSQFERLVILDYIIRNTDRGNDNWLVRYEKQKCEKEIDHKESKWIDDEEFLIKIAAIDNGLAFP
FKHPDEWRAYPFHWAWLPQAKVPFSEEIRNLILPYISDMNFVQDLCEDLYELFKTDKGFDKATFESQMSV
MRGQILNLTQALRDGKSPFQLVQIPCVIVERSQGGSQGRIVHLSNSFTQTVNCRKPFFSSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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