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Report for CCDS34300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34300.1 Public Homo sapiens 5 RAB24 24 110 108 CCDS HistoryNCBI Gene:53917Re-query CCDS DB by CCDS ID:34300.1Re-query CCDS DB by GeneID:53917See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303251.11 ENSP00000304376.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303251.11Link to Ensembl Protein Viewer:ENSP00000304376.6Re-query CCDS DB by Nucleotide ID:ENST00000303251Re-query CCDS DB by Protein ID:ENSP00000304376
Original member Current member EBI ENST00000393611.6 ENSP00000377235.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393611.6Link to Ensembl Protein Viewer:ENSP00000377235.2Re-query CCDS DB by Nucleotide ID:ENST00000393611Re-query CCDS DB by Protein ID:ENSP00000377235
Original member Current member NCBI NM_001031677.4 NP_001026847.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031677.4Link to Protein Sequence:NP_001026847.1Re-query CCDS DB by Nucleotide ID:NM_001031677Re-query CCDS DB by Protein ID:NP_001026847Link to BLAST:NP_001026847.1
Original member Current member NCBI NM_130781.4 NP_570137.2 Accepted alive Link to Nucleotide Sequence:NM_130781.4Link to Protein Sequence:NP_570137.2Re-query CCDS DB by Nucleotide ID:NM_130781Re-query CCDS DB by Protein ID:NP_570137Link to BLAST:NP_570137.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026847.1 203 Q969Q5 203 100% 0 0
NP_570137.2 203 Q969Q5 203 100% 0 0

Chromosomal Locations for CCDS 34300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 177301743 177301807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177301925 177301987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177302128 177302178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177302397 177302496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177302577 177302644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177302752 177302830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177303009 177303077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 177303172 177303288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGAGCGGGCAGCGCGTGGACGTCAAGGTGGTGATGCTGGGCAAGGAGTACGTGGGCAAGACTAGCCTGG
TGGAGCGCTACGTGCACGACCGCTTTCTGGTGGGGCCTTATCAGAACACCATCGGGGCCGCCTTCGTGGC
CAAGGTGATGTCGGTCGGAGACCGGACTGTGACATTAGGTATTTGGGACACAGCAGGCTCTGAGCGCTAT
GAGGCCATGAGTAGAATCTACTATCGGGGTGCCAAGGCTGCCATCGTCTGCTATGACCTCACAGACAGCA
GCAGCTTTGAGCGAGCAAAGTTCTGGGTGAAGGAACTGCGCAGCCTAGAGGAGGGCTGCCAAATCTACTT
ATGTGGCACCAAGAGTGACCTGCTGGAAGAAGACCGGAGGCGTCGACGTGTGGACTTCCACGACGTCCAG
GACTATGCAGACAATATCAAAGCTCAGCTCTTTGAAACATCCAGCAAGACAGGCCAGAGTGTGGACGAGC
TCTTCCAGAAAGTGGCAGAGGATTACGTCAGTGTGGCTGCCTTCCAGGTGATGACAGAGGACAAGGGCGT
GGATCTGGGCCAGAAGCCAAACCCCTACTTCTACAGCTGTTGTCATCACTGA

Translation (203 aa):
MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERY
EAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQ
DYADNIKAQLFETSSKTGQSVDELFQKVAEDYVSVAAFQVMTEDKGVDLGQKPNPYFYSCCHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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